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Add DIWG ancestry calls as attributes at Patient Level #670

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inodb opened this issue Aug 20, 2024 · 0 comments

Open

3 tasks

Add DIWG ancestry calls as attributes at Patient Level #670

inodb opened this issue Aug 20, 2024 · 0 comments

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inodb commented Aug 20, 2024 •

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In ProcessSynapseJSON, add these as patient level attributes
On the Portal we can add a new "Ancestry" Filter to the Demographics dropdown:
Data should also be downloadable from the Cases Tab here:

htan_singlecell_ancestry.zip

Notes

We can average the calls per patient:

Quick question: I noticed each of the results are per sample. It makes sense as that’s how they were obtained, but I’m wondering if it would be easier for reusers of the data if we share the results as a patient level attribute as well. Basically we would make some informed decision on how to assign a patient’s ancestry given the results from one or more samples

Yea, it is a good question. Averaging would be fine with me if they are pretty consistent across samples within a patient.

inodb added the enhancement label

inodb assigned onursumer

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