20230412-lyso.json

{
    "1": {
        "category": "extraction",
        "function": "select_channel_from_raw",
        "parameter_values": {
            "chan": 1
        },
        "parent": 0
    },
    "2": {
        "category": "preprocessing",
        "function": "scale_and_smooth",
        "parameter_values": {
            "gauss_sig": 1.4,
            "median_sz": 4
        },
        "parent": 1
    },
    "3": {
        "category": "core",
        "function": "spot_filter_3",
        "parameter_values": {
            "dot_cut_1": 0.09,
            "dot_cut_2": 0.07,
            "dot_cut_3": 0.01,
            "dot_scale_1": 5.0,
            "dot_scale_2": 2.5,
            "dot_scale_3": 1.0
        },
        "parent": 2
    },
    "4": {
        "category": "core",
        "function": "filament_filter",
        "parameter_values": {
            "filament_cut": 0.106164,
            "filament_scale": 1.712329
        },
        "parent": 2
    },
    "5": {
        "category": "core",
        "function": "logical_or",
        "parent": [
            3,
            4
        ]
    },
    "6": {
        "category": "postprocessing",
        "function": "fill_and_filter_linear_size",
        "parameter_values": {
            "hole_max": 38,
            "hole_min": 0,
            "method": "slice_by_slice",
            "min_size": 4
        },
        "parent": 5
    },
    "7": {
        "category": "postprocessing",
        "function": "label_uint16",
        "parent": 6
    }
}