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xref_LOD_mapping.json
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{
"mappings": [
{
"db_name": "ArrayExpress",
"example_id": "ENSG00000265094",
"ignore": true
},
{
"db_name": "BaylorCollege",
"example_id": "NCRNA_8378",
"ignore": true
},
{
"db_name": "BioGRID",
"example_id": "59420",
"id_namespace": "biogrid"
},
{
"db_name": "CADRE",
"example_id": "AFUA_3G01196",
"ignore": true
},
{
"db_name": "CCDS",
"example_id": "CCDS10469",
"id_namespace": "ccds"
},
{
"db_name": "ChEMBL",
"example_id": "CHEMBL1075166",
"id_namespace": "chembl.target",
"canonical_LOD": "http://rdf.ebi.ac.uk/resource/chembl/target/",
"URI_type": "http://rdf.ebi.ac.uk/terms/chembl#SingleProtein"
},
{
"db_name": "Clone_based_ensembl_gene",
"example_id": "AL162430.1",
"ignore": true
},
{
"db_name": "Clone_based_ensembl_transcript",
"ignore":true
},
{
"db_name": "Clone_based_vega_gene",
"ignore":true
},
{
"db_name": "Clone_based_vega_transcript",
"ignore":true
},
{
"db_name": "DBASS3",
"example_id": "80",
"ignore": true
},
{
"db_name": "ensembl",
"exampled_id": "ENSG00000265094",
"id_namespace": "ensembl"
},
{
"db_name": "EC_NUMBER",
"example_id": "2.7.11.23",
"id_namespace": "ec-code",
"EDAM_type": "data_1011",
"EDAM_term": "EC number"
},
{
"db_name": "EMBL",
"example_id": "AABR06092040",
"id_namespace": "ena.embl"
},
{
"db_name": "EMBL_predicted",
"example_id": "AAHF01000010",
"id_namespace": "ena.embl"
},
{
"db_name": "ENA_TRANSCRIPT",
"example_id": "AFUA_3G01196",
"ignore": true
},
{
"db_name": "Ens_Hs_transcript",
"example_id": "ENST00000266557",
"ignore": true
},
{
"db_name": "ENS_LRG_gene",
"example_id": "LRG_357",
"id_namespace": "lrg"
},
{
"db_name": "ENS_LRG_transcript",
"example_id": "LRG_357t1",
"id_namespace": "lrg"
},
{
"db_name": "EntrezGene",
"example_id": "100125760",
"id_namespace": "ncbigene",
"URI_type": "http://purl.obolibrary.org/obo/SO_0000704"
},
{
"db_name": "EntrezGene_trans_name",
"example_id": "CTD-2297D10.2-001",
"ignore": true
},
{
"db_name": "EPD",
"example_id": "11050",
"id_namespace": "epd"
},
{
"db_name": "Fantom",
"ignore": true
},
{
"db_name": "flybase_annotation_id",
"example_id": "FBan0011023",
"ignore": true
},
{
"db_name": "flybase_gene_id",
"example_id": "FBgn0031208",
"id_namespace": "flybase"
},
{
"db_name": "flybase_transcript_id",
"example_id": "FBtr0300689",
"id_namespace": "flybase"
},
{
"db_name": "flybase_translation_id",
"example_id": "FBpp0289913",
"id_namespace": "flybase"
},
{
"db_name": "FlyBaseCGID_gene",
"example_id": "CG11023",
"ignore": true
},
{
"db_name": "FlyBaseCGID_transcript",
"example_id": "CG11023-RB",
"ignore": true
},
{
"db_name": "FlyBaseCGID_translation",
"example_id": "CG11023-PB",
"ignore": true
},
{
"db_name": "FlyBaseName_gene",
"example_id": "FBgn0031208",
"id_namespace": "flybase"
},
{
"db_name": "FlyBaseName_transcript",
"example_id": "FBtr0300689",
"id_namespace": "flybase"
},
{
"db_name": "FlyBaseName_translation",
"example_id": "FBpp0289913",
"id_namespace": "flybase"
},
{
"db_name": "FlyReactome",
"example_id": "101824",
"ignore": true
},
{
"db_name": "GenomeRNAi",
"example_id": "33155",
"ignore": true
},
{
"db_name": "Genoscope_pred_gene",
"example_id": "GSTENG10001827001",
"ignore": true
},
{
"db_name": "Genoscope_pred_translation",
"example_id": "GSTENT10001827001",
"ignore": true
},
{
"db_name": "GO",
"example_id": "GO:0000166",
"id_namespace": "go",
"URI_type": "http://purl.obolibrary.org/obo/",
"regex": "/GO:/GO_/"
},
{
"db_name": "GO_to_gene",
"example_id": "GO:0016246",
"id_namespace": "go",
"URI_type": "http://purl.obolibrary.org/obo/",
"regex": "/GO:/GO_/"
},
{
"db_name": "goslim_goa",
"example_id": "GO:0003674",
"id_namespace": "go",
"URI_type": "http://purl.obolibrary.org/obo/",
"regex": "/GO:/GO_/"
},
{
"db_name": "Gramene_MarkersDB_EST",
"example_id": "DT479660",
"ignore": true
},
{
"db_name": "Gramene_MarkersDB_mRNA",
"example_id": "XM_002305109",
"ignore": true
},
{
"db_name": "Gramene_Pathway",
"example_id": "6.3.2.12",
"ignore": true
},
{
"db_name": "HGNC",
"example_id": "HGNC:13598",
"id_namespace": "hgnc"
},
{
"db_name": "HGNC_trans_name",
"example_id": "CCRN4L (2 of 2)-201",
"ignore": true
},
{
"db_name": "HPA",
"example_id": "50817",
"ignore": true
},
{
"db_name": "HPA",
"example_id": "HPA050817",
"ignore": true
},
{
"db_name": "IKMCs_ES_cells_available",
"ignore": true
},
{
"db_name": "IKMCs_Mice_available",
"ignore": true
},
{
"db_name": "IKMCs_No_products_available_yet",
"ignore": true
},
{
"db_name": "IKMCs_Vector_available",
"ignore": true
},
{
"db_name": "InteractiveFly",
"example_id": "cytoskel/lethl2g1.htm",
"ignore": true
},
{
"db_name": "Interpro",
"example_id": "IPR003653",
"id_namespace": "interpro"
},
{
"db_name": "IPI",
"example_id": "IPI00867334",
"ignore": true
},
{
"db_name": "IRGSPv1_GENE",
"example_id": "OS11G0599200",
"ignore": true
},
{
"db_name": "IRGSPv1_TRANSCRIPT",
"example_id": "OS11T0599200-01"
},
{
"db_name": "KEGG",
"example_id": "00450+2.1.1.-",
"ignore": true
},
{
"db_name": "MEROPS",
"example_id": "C12.001",
"id_namespace": "merops"
},
{
"db_name": "MetaCyc",
"example_id": "PWY-7248",
"ignore": true
},
{
"db_name": "MGI",
"example_id": "MGI:102478",
"id_namespace": "mgi"
},
{
"db_name": "MGI_trans_name",
"ignore": true
},
{
"db_name": "MIM_GENE",
"example_id": "602349",
"ignore": true
},
{
"db_name": "MIM_MORBID",
"example_id": "615122",
"ignore": true
},
{
"db_name": "miRBase",
"example_id": "MI0000866",
"id_namespace": "mirbase"
},
{
"db_name": "miRBase",
"example_id": "MIMAT0005480",
"id_namespace": "mirbase.mature"
},
{
"db_name": "miRBase_gene_name",
"example_id": "dre-let-7a-1.1",
"ignore": true
},
{
"db_name": "miRBase_trans_name",
"ignore": true
},
{
"db_name": "MitoDrome",
"example_id": "MTDROME11455",
"ignore": true
},
{
"db_name": "NASC_GENE_ID",
"example_id": "AT3G18710",
"ignore": true
},
{
"db_name": "OTTG",
"example_id": "OTTDARG00000029138",
"ignore": true
},
{
"db_name": "OTTT",
"ignore": true
},
{
"db_name": "PDB",
"example_id": "1AU7",
"id_namespace": "pdb"
},
{
"db_name": "PHI",
"example_id": "PHI:2322",
"ignore": true
},
{
"db_name": "PlantGDB_PUT",
"example_id": "PUT-157a-Populus_trichocarpa-7958",
"ignore": true
},
{
"db_name": "PO",
"example_id": "PO:0001185",
"id_namespace": "po",
"canonical_LOD": "http://purl.obolibrary.org/obo/",
"regex": "/PO:/PO_/"
},
{
"db_name": "protein_id",
"example_id": "AAC51247",
"id_namespace": "insdc",
"URI_type": "http://rdf.ebi.ac.uk/resource/ensembl/NucleotideSequenceDatabase"
},
{
"db_name": "protein_id_predicted",
"example_id": "CAF91510",
"id_namespace": "insdc",
"URI_type": "http://rdf.ebi.ac.uk/resource/ensembl/NucleotideSequenceDatabase"
},
{
"db_name": "PUBMED",
"example_id": "10366627",
"id_namespace": "pubmed"
},
{
"db_name": "Reactome",
"example_id": "REACT_71",
"id_namespace": "reactome"
},
{
"db_name": "RefSeq_dna",
"example_id": "NM_001179183",
"id_namespace": "refseq"
},
{
"db_name": "RefSeq_dna_predicted",
"example_id": "XM_001481536",
"id_namespace": "refseq"
},
{
"db_name": "RefSeq_genomic",
"example_id": "NG_002398",
"id_namespace": "refseq"
},
{
"db_name": "RefSeq_mRNA",
"example_id": "NM_001105043",
"id_namespace": "refseq"
},
{
"db_name": "RefSeq_mRNA_predicted",
"example_id": "XM_001084245",
"id_namespace": "refseq"
},
{
"db_name": "RefSeq_ncRNA",
"example_id": "NR_022451",
"id_namespace": "refseq"
},
{
"db_name": "RefSeq_ncRNA_predicted",
"example_id": "XR_009777",
"id_namespace": "refseq"
},
{
"db_name": "RefSeq_peptide",
"example_id": "NP_001006336",
"id_namespace": "refseq"
},
{
"db_name": "RefSeq_peptide_predicted",
"example_id": "XP_001107329",
"id_namespace": "refseq"
},
{
"db_name": "RefSeq_rna",
"example_id": "NR_001535",
"id_namespace": "refseq"
},
{
"db_name": "RefSeq_rna_predicted",
"example_id": "XR_078437",
"id_namespace": "refseq"
},
{
"db_name": "RFAM",
"example_id": "RF00001",
"id_namespace": "rfam"
},
{
"db_name": "RFAM_gene_name",
"example_id": "5S_rRNA.420",
"ignore": true
},
{
"db_name": "RFAM_trans_name",
"ignore": true
},
{
"db_name": "RGD",
"example_id": "6486239",
"id_namespace": "rgd"
},
{
"db_name": "RGD_trans_name",
"example_id": "Ppm1n-201",
"ignore": true
},
{
"db_name": "Rhea",
"example_id": "NCRNA_8378",
"ignore": "rhea"
},
{
"db_name": "RNAMMER",
"example_id": "8s_rRNA",
"ignore": true
},
{
"db_name": "SGD",
"example_id": "S0002776",
"id_namespace": "sgd"
},
{
"db_name": "SGD_GENE",
"example_id": "S000001097",
"id_namespace": "sgd"
},
{
"db_name": "SGD_TRANSCRIPT",
"example_id": "S000001097",
"id_namespace": "sgd"
},
{
"db_name": "shares_CDS_and_UTR_with_OTTT",
"ignore": true
},
{
"db_name": "shares_CDS_with_OTTT",
"ignore": true
},
{
"db_name": "TAIR_LOCUS",
"example_id": "AT3G18710",
"id_namespace": "tair.locus"
},
{
"db_name": "TAIR_LOCUS_MODEL",
"example_id": "AT3G18710.1",
"id_namespace": "tair.locus"
},
{
"db_name": "TAIR_SYMBOL",
"example_id": "ATA7",
"ignore": true
},
{
"db_name": "TAIR_TRANSLATION",
"example_id": "AT3G18710",
"ignore": true
},
{
"db_name": "TIGR_GeneIndex",
"example_id": "TC60870",
"ignore": true
},
{
"db_name": "TIGR_LOCUS",
"example_id": "LOC_Os11g38650.1",
"ignore": true
},
{
"db_name": "TransFac",
"example_id": "T01396",
"ignore": true
},
{
"db_name": "UCSC",
"ignore": true
},
{
"db_name": "UniGene",
"example_id": "Acr.9311",
"id_namespace": "unigene"
},
{
"db_name": "UniParc",
"example_id": "UPI00000008FF",
"id_namespace": "uniparc",
"canonical_LOD": "http://purl.uniprot.org/uniparc/",
"URI_type": "http://purl.uniprot.org/core/Sequence"
},
{
"db_name": "UniPathway",
"example_id": "UPA00545",
"id_namespace": "unipathway"
},
{
"db_name": "Uniprot/SPTREMBL",
"example_id": "A4D9Z1",
"id_namespace": "uniprot",
"canonical_LOD": "http://purl.uniprot.org/uniprot/",
"URI_type": "http://purl.uniprot.org/core/Protein"
},
{
"db_name": "Uniprot/SPTREMBL_predicted",
"example_id": "Q4T6H2",
"id_namespace": "uniprot",
"canonical_LOD": "http://purl.uniprot.org/uniprot/",
"URI_type": "http://purl.uniprot.org/core/Protein"
},
{
"db_name": "Uniprot/SWISSPROT",
"example_id": "A0MH06",
"id_namespace": "uniprot",
"canonical_LOD": "http://purl.uniprot.org/uniprot/",
"URI_type": "http://purl.uniprot.org/core/Reviewed_Protein"
},
{
"db_name": "Uniprot/SWISSPROT_predicted",
"id_namespace": "uniprot",
"canonical_LOD": "http://purl.uniprot.org/uniprot/",
"URI_type": "http://purl.uniprot.org/core/Reviewed_Protein"
},
{
"db_name": "Uniprot_gn",
"canonical_LOD": "http://purl.uniprot.org/uniprot/",
"id_namespace" : "uniprot"
},
{
"db_name": "Uniprot_gn_trans_name",
"ignore": true,
"canonical_LOD": "http://purl.uniprot.org/uniprot/",
"id_namespace" : "uniprot"
},
{
"db_name": "Vega_gene",
"example_id": "OTTDARG00000029138",
"ignore": true
},
{
"db_name": "Vega_transcript",
"ignore": true
},
{
"db_name": "Vega_translation",
"ignore": true
},
{
"db_name": "WikiGene",
"example_id": "100125760",
"id_namespace": "wikigenes"
},
{
"db_name": "wormbase_gene",
"example_id": "WBGene00022613",
"id_namespace": "wormbase"
},
{
"db_name": "wormbase_gseqname",
"example_id": "WBGene00022613",
"id_namespace": "wormbase"
},
{
"db_name": "wormbase_locus",
"example_id": "WBGene00022613",
"id_namespace": "wormbase"
},
{
"db_name": "wormbase_transcript",
"example_id": "ZC449.3a.1",
"ignore": true
},
{
"db_name": "wormpep_id",
"example_id": "CE29622",
"ignore": true
},
{
"db_name": "Xenbase",
"example_id": "XB-GENE-5753086",
"id_namespace": "xenbase"
},
{
"db_name": "Xenbase_trans_name",
"example_id": "golt1b-201",
"ignore": true
},
{
"db_name": "ZFIN_ID",
"example_id": "ZDB-GENE-040718-36",
"id_namespace": "zfin"
},
{
"db_name": "ZFIN_ID_trans_name",
"example_id": "hvcn1-201",
"ignore": true
}
]
}