From 95ee542ca8bfafaa9c43e7c50ff19a7cd3dcbd6d Mon Sep 17 00:00:00 2001 From: Cal <35017184+CallumWalley@users.noreply.github.com> Date: Thu, 7 Nov 2024 10:35:22 +1300 Subject: [PATCH] Updated Module List (#390) Co-authored-by: CallumWalley --- docs/assets/module-list.json | 450 ++++----------- docs/software_updates.xml | 1007 +++++++++++++++++++++++++++++++++- 2 files changed, 1125 insertions(+), 332 deletions(-) diff --git a/docs/assets/module-list.json b/docs/assets/module-list.json index 4e2950f8a..04d1b6d65 100644 --- a/docs/assets/module-list.json +++ b/docs/assets/module-list.json @@ -929,7 +929,7 @@ "force_show": "False" }, "AOCL-BLIS": { - "description": "Optimized version of FFTW for AMD EPYC family of processors..", + "description": "Optimized version of BLIS for AMD EPYC family of processors..", "domains": [ "numlib" ], @@ -944,9 +944,9 @@ "network_licences": [], "default": "4.0-GCC-11.3.0", "default_type": "latest", - "last_updated": 1679529934, + "last_updated": 1679529940, "modulefile_text": "", - "module_path": "/opt/nesi/CS400_centos7_bdw/modules/all/AOCL-BLIS/4.0-GCC-11.3.0.bak_20230323130534_189751", + "module_path": "/opt/nesi/CS400_centos7_bdw/modules/all/AOCL-BLIS/4.0-GCC-11.3.0.lua", "force_hide": "False", "force_show": "False" }, @@ -1580,7 +1580,6 @@ "versions": [ "20180226-gimpi-2018b", "20190508-gimpi-2018b", - "20200620-gimpi-2020", "20200620-gimpi-2020a", "20220112-gimpi-2020a", "20220324-gimpi-2020a" @@ -1597,11 +1596,11 @@ } ], "network_licences": [], - "default": "20200620-gimpi-2020", + "default": "20180226-gimpi-2018b", "default_type": "latest", "last_updated": 1648087186, "modulefile_text": "", - "module_path": "/opt/nesi/CS400_centos7_bdw/modules/all/Basilisk/20200620-gimpi-2020.bak_20210505170314_163592", + "module_path": "/opt/nesi/CS400_centos7_bdw/modules/tools/Basilisk/20180226-gimpi-2018b.lua", "force_hide": "False", "force_show": "False" }, @@ -2665,33 +2664,6 @@ "force_hide": "False", "force_show": "False" }, - "BreakDancer": { - "description": "Genome-wide detection of structural variants from next generation paired-end sequencing reads.", - "domains": [ - "bio", - "biology" - ], - "extensions": [], - "licence_type": "", - "homepage": "http://gmt.genome.wustl.edu/packages/breakdancer/index.html", - "support": "", - "versions": [ - "1.4.5-gimkl-2017a.lua" - ], - "admin_list": [ - { - "1.4.5-gimkl-2017a": "Warning: BreakDancer is obsolete and will soon be removed." - } - ], - "network_licences": [], - "default": "1.4.5-gimkl-2017a.lua", - "default_type": "latest", - "last_updated": 1537315510, - "modulefile_text": "", - "module_path": "/opt/nesi/CS400_centos7_bdw/modules/all/BreakDancer/1.4.5-gimkl-2017a.lua.bak_20180919120510", - "force_hide": "False", - "force_show": "False" - }, "BreakSeq2": { "description": "Nucleotide-resolution analysis of structural variants", "domains": [ @@ -4942,7 +4914,11 @@ "description": "Integrated simulation of sediment transport and morphology, waves, water quality and ecology.", "domains": [ "geo", - "hydrodynamics" + "hydrodynamics", + "morphodynamics", + "particle modelling", + "water quality testing", + "wave modelling" ], "extensions": [], "licence_type": "", @@ -5412,29 +5388,25 @@ "force_show": "False" }, "EasyBuild": { - "description": "", + "description": "EasyBuild is a software build and installation framework\n written in Python that allows you to install software in a structured,\n repeatable and robust way.", "domains": [ "tools" ], "extensions": [], "licence_type": "", - "homepage": "", + "homepage": "https://easybuilders.github.io/easybuild", "support": "", "versions": [ - "4.4", - "4.7", "4.7.1", - "4.8", - "4.8.1", - "4.9" + "4.8.1" ], "admin_list": [], "network_licences": [], - "default": "4.7", + "default": "4.8.1", "default_type": "latest", - "last_updated": 1709852943, + "last_updated": 1694654149, "modulefile_text": "", - "module_path": "/opt/nesi/share/modules/all/EasyBuild/4.7.0", + "module_path": "/opt/nesi/share/modules/all/EasyBuild/4.8.1.lua", "force_hide": "False", "force_show": "False" }, @@ -6956,10 +6928,7 @@ "support": "", "versions": [ "19.0", - "20.0.2", - "21.1", - "21.1.3.lua", - "22.1" + "20.0.2" ], "admin_list": [ { @@ -6970,11 +6939,11 @@ } ], "network_licences": [], - "default": "21.1.3.lua", + "default": "20.0.2", "default_type": "latest", - "last_updated": 1672783956, + "last_updated": 1623884708, "modulefile_text": "", - "module_path": "/opt/nesi/share/modules/all/forge/21.1.3.lua.bk", + "module_path": "/opt/nesi/CS400_centos7_bdw/modules/all/forge/20.0.2.lua", "force_hide": "False", "force_show": "False" }, @@ -7391,39 +7360,6 @@ "force_hide": "False", "force_show": "False" }, - "Gaussian": { - "description": "", - "domains": [ - "chem", - "chemistry", - "mahuika" - ], - "extensions": [], - "licence_type": "proprietary", - "homepage": "", - "support": "https://www.docs.nesi.org.nz/Scientific_Computing/Supported_Applications/Gaussian", - "versions": [ - "09-B", - "09-C", - "09-D" - ], - "admin_list": [ - { - "09-B.01": "Warning: Gaussian/09-B.01 is old and marked for deletion. Please select a more recent version (try 'module spider Gaussian') or let us know that you still need it." - }, - { - "09-C.01": "Warning: Gaussian/09-C.01 is old and marked for deletion. Please select a more recent version (try 'module spider Gaussian') or let us know that you still need it." - } - ], - "network_licences": [], - "default": "09-C", - "default_type": "latest", - "last_updated": 1534202024, - "modulefile_text": "", - "module_path": "/opt/nesi/CS400_centos7_bdw/modules/all/Gaussian/09-C.01", - "force_hide": "False", - "force_show": "False" - }, "GCC": { "description": "The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada,\n as well as libraries for these languages (libstdc++, libgcj,...).", "domains": [ @@ -7533,7 +7469,7 @@ "force_show": "False" }, "GDAL": { - "description": "GDAL is a translator library for raster geospatial data formats that is released under an X/MIT style\n Open Source license by the Open Source Geospatial Foundation. As a library, it presents a single abstract data model\n to the calling application for all supported formats. It also comes with a variety of useful command-line utilities for\n data translation and processing.\n NOTE: The GDAL IO cache by default uses 5% of total memory. This seems not necessary. This module sets GDAL_CACHEMAX=256 (256MB), \n which should have no performance impact. Feel free to change if necessary, using 'export GDAL_CACHEMAX=xxx' (in your job script) \n after loading the GDAL module. ", + "description": "GDAL is a translator library for raster geospatial data formats that is released under an X/MIT style\n Open Source license by the Open Source Geospatial Foundation. As a library, it presents a single abstract data model\n to the calling application for all supported formats. It also comes with a variety of useful command-line utilities for\n data translation and processing. \n NOTE: The GDAL IO cache by default uses 5% of total memory. This seems not necessary. This module sets GDAL_CACHEMAX=256 (256MB), which should have no performance impact. Feel free to change if necessary, using 'export GDAL_CACHEMAX=xxx' (in your job script) after loading the GDAL module.", "domains": [ "earth_science", "geo" @@ -7547,7 +7483,6 @@ "2.4.0-gimkl-2018b", "3.0.1-gimkl-2018b", "3.0.4-gimkl-2020a", - "3.0.4-gimkl-2020a.lua", "3.4.1-gimkl-2020a", "3.5.1-gimpi-2022a", "3.6.3-gimpi-2022a", @@ -7555,11 +7490,11 @@ ], "admin_list": [], "network_licences": [], - "default": "3.0.4-gimkl-2020a.lua", + "default": "2.2.2-gimkl-2017a-GEOS-3.5.1", "default_type": "latest", "last_updated": 1701401986, "modulefile_text": "", - "module_path": "/opt/nesi/CS400_centos7_bdw/modules/all/GDAL/3.0.4-gimkl-2020a.lua.bak", + "module_path": "/opt/nesi/CS400_centos7_bdw/modules/geo/GDAL/2.2.2-gimkl-2017a-GEOS-3.5.1.lua", "force_hide": "False", "force_show": "False" }, @@ -7586,28 +7521,6 @@ "force_hide": "False", "force_show": "False" }, - "geany": { - "description": "", - "domains": [ - "devel" - ], - "extensions": [], - "licence_type": "", - "homepage": "", - "support": "", - "versions": [ - "1" - ], - "admin_list": [], - "network_licences": [], - "default": "1", - "default_type": "latest", - "last_updated": 1560158264, - "modulefile_text": "", - "module_path": "/opt/nesi/share/modules/all/geany/1.35", - "force_hide": "False", - "force_show": "False" - }, "GEMMA": { "description": "Genome-wide Efficient Mixed Model Association", "domains": [ @@ -8009,28 +7922,6 @@ "force_hide": "False", "force_show": "False" }, - "GLibmm": { - "description": "C++ bindings for Glib", - "domains": [ - "vis" - ], - "extensions": [], - "licence_type": "", - "homepage": "https://www.gtk.org/", - "support": "", - "versions": [ - "2.49.7-GCCcore-9.2.0.lua" - ], - "admin_list": [], - "network_licences": [], - "default": "2.49.7-GCCcore-9.2.0.lua", - "default_type": "latest", - "last_updated": 1641943019, - "modulefile_text": "", - "module_path": "/opt/nesi/CS400_centos7_bdw/modules/all/GLibmm/2.49.7-GCCcore-9.2.0.lua.bak", - "force_hide": "False", - "force_show": "False" - }, "GlimmerHMM": { "description": "Gene finder based on a Generalized Hidden Markov Model.", "domains": [ @@ -8182,13 +8073,14 @@ "2.19.0-gimkl-2022a-Python-3.10.5", "2.24.0-gimkl-2022a-Python-3.10.5", "2.27.1-foss-2023a-Python-3.11.6", - 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"force_hide": "False", - "force_show": "False" - }, "HOPS": { "description": "Pipeline which focuses on screening MALT data for the presence of a user-specified list of target species.", "domains": [ @@ -9666,7 +9528,7 @@ "network_licences": [], "default": "2018b", "default_type": "latest", - "last_updated": 1654569247, + "last_updated": 1654569252, "modulefile_text": "", "module_path": "/opt/nesi/CS400_centos7_bdw/modules/all/iimpi/2018b.lua", "force_hide": "False", @@ -9740,11 +9602,11 @@ ], "admin_list": [], "network_licences": [], - "default": "2022.0.2-iimpi-2022a", + "default": "2022.0.2-gimpi-2022a", "default_type": "latest", - "last_updated": 1654569291, + "last_updated": 1654569298, "modulefile_text": "", - "module_path": "/opt/nesi/CS400_centos7_bdw/modules/all/imkl-FFTW/2022.0.2-iimpi-2022a.bak_20220607143451_64529", + "module_path": "/opt/nesi/CS400_centos7_bdw/modules/all/imkl-FFTW/2022.0.2-gimpi-2022a.lua", "force_hide": "False", "force_show": "False" }, @@ -10505,8 +10367,6 @@ "homepage": "", "support": "https://www.docs.nesi.org.nz/Scientific_Computing/Supported_Applications/Julia", "versions": [ - 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"devel" + "lib" ], "extensions": [], "licence_type": "", - "homepage": "https://libsigcplusplus.github.io/libsigcplusplus/", + "homepage": "https://doc.libsodium.org/", "support": "", "versions": [ - "2.10.2-GCCcore-7.4.0.lua" + "1.0.18" ], "admin_list": [], "network_licences": [], - "default": "2.10.2-GCCcore-7.4.0.lua", + "default": "1.0.18", "default_type": "latest", - "last_updated": 1641942587, + "last_updated": 1730677458, "modulefile_text": "", - "module_path": "/opt/nesi/CS400_centos7_bdw/modules/all/libsigc++/2.10.2-GCCcore-7.4.0.lua.bak", + "module_path": "/opt/nesi/CS400_centos7_bdw/modules/all/libsodium/1.0.18.lua", "force_hide": "False", "force_show": "False" }, @@ -12150,28 +12009,6 @@ "force_hide": "False", "force_show": "False" }, - "libxml++": { - "description": "libxml++ is a C++ wrapper for the libxml XML parser library.", - "domains": [ - "lib" - ], - "extensions": [], - "licence_type": "", - "homepage": "http://libxmlplusplus.sourceforge.net", - "support": "", - "versions": [ - "2.40.1-GCCcore-9.2.0.lua" - ], - "admin_list": [], - "network_licences": [], - "default": "2.40.1-GCCcore-9.2.0.lua", - "default_type": "latest", - "last_updated": 1641943157, - "modulefile_text": "", - "module_path": "/opt/nesi/CS400_centos7_bdw/modules/all/libxml++/2.40.1-GCCcore-9.2.0.lua.bak", - "force_hide": "False", - "force_show": "False" - }, "libxml2": { "description": "Libxml2 is the XML C parser and \ntoolchain developed for the Gnome project\n (but usable outside of the Gnome platform).", "domains": [ @@ -13356,6 +13193,40 @@ "force_hide": "False", "force_show": "False" }, + "matlab-proxy": { + "description": "Python package which enables you to launch MATLAB and access it from a web browser.", + "domains": [ + "math" + ], + "extensions": [ + "aiohappyeyeballs-2.4.3", + "aiohttp-3.10.5", + "aiohttp-session-2.12.1", + "aiosignal-1.3.1", + "cryptography-43.0.1", + "frozenlist-1.5.0", + "importlib_resources-6.4.5", + "matlab-proxy-0.23.1", + "multidict-6.1.0", + "propcache-0.2.0", + "yarl-1.17.1" + ], + "licence_type": "", + "homepage": "https://github.com/mathworks/matlab-proxy", + "support": "", + "versions": [ + "0.23.1-foss-2023a" + ], + "admin_list": [], + "network_licences": [], + "default": "0.23.1-foss-2023a", + "default_type": "latest", + "last_updated": 1730688310, + "modulefile_text": "", + "module_path": "/opt/nesi/CS400_centos7_bdw/modules/math/matlab-proxy/0.23.1-foss-2023a.lua", + "force_hide": "False", + "force_show": "False" + }, "Maven": { "description": "Binary maven install, Apache Maven is a software project management and comprehension tool. Based on\nthe concept of a project object model (POM), Maven can manage a project's build, reporting and documentation from a\ncentral piece of information.\n", "domains": [ @@ -14465,13 +14336,14 @@ "homepage": "https://github.com/nanoporetech/modkit", "support": "", "versions": [ - "0.2.5-GCC-12.3.0" + "0.2.5-GCC-12.3.0", + "0.4.1-GCC-12.3.0" ], "admin_list": [], "network_licences": [], "default": "0.2.5-GCC-12.3.0", "default_type": "latest", - "last_updated": 1709775168, + "last_updated": 1730339522, "modulefile_text": "", "module_path": "/opt/nesi/CS400_centos7_bdw/modules/bio/modkit/0.2.5-GCC-12.3.0.lua", "force_hide": "False", @@ -15005,28 +14877,6 @@ "force_hide": "False", "force_show": "False" }, - "nano": { - "description": "", - "domains": [ - "lang" - ], - "extensions": [], - "licence_type": "", - "homepage": "", - "support": "", - "versions": [ - "3" - ], - "admin_list": [], - "network_licences": [], - "default": "3", - "default_type": "latest", - "last_updated": 1540804510, - "modulefile_text": "", - "module_path": "/opt/nesi/share/modules/lang/nano/3.1", - "force_hide": "False", - "force_show": "False" - }, "NanoComp": { "description": "Comparing runs of Oxford Nanopore sequencing data and alignments", "domains": [ @@ -15486,28 +15336,6 @@ "force_hide": "False", "force_show": "False" }, - "nearline": { - "description": "", - "domains": [ - "tools" - ], - "extensions": [], - "licence_type": "", - "homepage": "", - "support": "", - "versions": [ - "1.1.0" - ], - "admin_list": [], - "network_licences": [], - "default": "1.1.0", - "default_type": "latest", - "last_updated": 1630017054, - "modulefile_text": "", - "module_path": "/opt/nesi/share/modules/tools/nearline/1.1.0.22", - "force_hide": "False", - "force_show": "False" - }, "NECAT": { "description": "Rrror correction and de-novo assembly tool for Nanopore long noisy reads", "domains": [ @@ -15727,7 +15555,8 @@ "22.10.3", "22.10.7", "23.04.1", - "23.10.0" + "23.10.0", + "24.04.4" ], "admin_list": [ { @@ -15752,7 +15581,7 @@ "network_licences": [], "default": "22.04.3", "default_type": "latest", - "last_updated": 1698204319, + "last_updated": 1730166651, "modulefile_text": "", "module_path": "/opt/nesi/CS400_centos7_bdw/modules/tools/Nextflow/22.04.3.lua", "force_hide": "False", @@ -15784,6 +15613,30 @@ "force_hide": "False", "force_show": "False" }, + "NextPolish2": { + "description": "a fast and efficient genome polishing tool for long-read assembly", + "domains": [ + "bio" + ], + "extensions": [ + "Paralleltask-0.2.3" + ], + "licence_type": "", + "homepage": "https://github.com/Nextomics/NextPolish2", + "support": "", + "versions": [ + "0.2.1-foss-2023a" + ], + "admin_list": [], + "network_licences": [], + "default": "0.2.1-foss-2023a", + "default_type": "latest", + "last_updated": 1730761725, + "modulefile_text": "", + "module_path": "/opt/nesi/CS400_centos7_bdw/modules/bio/NextPolish2/0.2.1-foss-2023a.lua", + "force_hide": "False", + "force_show": "False" + }, "NGS": { "description": "NGS is a new, domain-specific API for accessing reads, alignments and pileups produced from\n Next Generation Sequencing.", "domains": [ @@ -15937,26 +15790,6 @@ "force_hide": "False", "force_show": "False" }, - "NONMEM": { - "description": "", - "domains": [], - "extensions": [], - "licence_type": "", - "homepage": "", - "support": "", - "versions": [ - "7.5" - ], - "admin_list": [], - "network_licences": [], - "default": "7.5", - "default_type": "latest", - "last_updated": 1681340744, - "modulefile_text": "", - "module_path": "/opt/nesi/CS400_centos7_bdw/modules/all/NONMEM/7.5.0-iimpi-2022a", - "force_hide": "False", - "force_show": "False" - }, "nseg": { "description": "Used to mask nucleic acid sequences", "domains": [ @@ -18402,13 +18235,15 @@ "bio", "base" ], - "extensions": [], + "extensions": [ + "Bio::SearchIO::hmmer-1.7.3", + "BioPerl-1.7.7" + ], "licence_type": "", "homepage": "http://www.vicbioinformatics.com/software.prokka.shtml", "support": "", "versions": [ "1.13.4-gimkl-2018b", - "1.13.4-gimkl-2018b.lua", "1.14.5-GCC-11.3.0", "1.14.5-GCC-9.2.0" ], @@ -18418,11 +18253,11 @@ } ], "network_licences": [], - "default": "1.13.4-gimkl-2018b.lua", + "default": "1.14.5-GCC-9.2.0", "default_type": "latest", "last_updated": 1670200261, "modulefile_text": "", - "module_path": "/opt/nesi/CS400_centos7_bdw/modules/all/prokka/1.13.4-gimkl-2018b.lua.bak_20190806113620", + "module_path": "/opt/nesi/CS400_centos7_bdw/modules/bio/prokka/1.14.5-GCC-9.2.0.lua", "force_hide": "False", "force_show": "False" }, @@ -18971,7 +18806,6 @@ "3.6.3-gimkl-2017a", "3.7.3-gimkl-2018b", "3.8.1-gimkl-2018b", - "3.8.2-gimkl-2020", "3.8.2-gimkl-2020a", "3.9.5-gimkl-2020a", "3.9.9-gimkl-2020a" @@ -19008,9 +18842,12 @@ "eccodes-python-0.9.7", "Fiona-1.8.13", "GDAL-3.0.4", + "geopandas-0.9.0", "munch-2.5.0", + "pygeos-0.9", "pyModis-2.0.9", "pyproj-2.5.0", + "rasterio-1.2.3", "rios-1.4.8", "Shapely-1.7.0" ], @@ -19022,7 +18859,6 @@ "3.10.5-gimkl-2022a", "3.11.3-gimkl-2022a", "3.7.3-gimkl-2018b", - "3.8.2-gimkl-2020", "3.8.2-gimkl-2020a", "3.9.5-gimkl-2020a", "3.9.9-gimkl-2020a" @@ -19036,11 +18872,11 @@ } ], "network_licences": [], - "default": "3.8.2-gimkl-2020", + "default": "3.8.2-gimkl-2020a", "default_type": "latest", "last_updated": 1683105477, "modulefile_text": "", - "module_path": "/opt/nesi/CS400_centos7_bdw/modules/all/Python-Geo/3.8.2-gimkl-2020.bak_20210503142647_57357", + "module_path": "/opt/nesi/CS400_centos7_bdw/modules/geo/Python-Geo/3.8.2-gimkl-2020a.lua", "force_hide": "False", "force_show": "False" }, @@ -19681,10 +19517,8 @@ "3.5.3-gimkl-2018b", "3.6.1-gimkl-2018b", "3.6.2-gimkl-2020a", - "4.0.1-gimkl-2020", "4.0.1-gimkl-2020a", "4.0.1-gimkl-2020a-TCLTK", - "4.1.0-gimkl-2020", "4.1.0-gimkl-2020a", "4.2.1-gimkl-2022a", "4.2.1-gimkl-2022a-TCLTK", @@ -20588,8 +20422,6 @@ "homepage": "http://www2.mrc-lmb.cam.ac.uk/relion/index.php/Main_Page", "support": "https://www.docs.nesi.org.nz/Scientific_Computing/Supported_Applications/Relion", "versions": [ - "2.0.3-gimkl-2017a.lua", - "2.1-gimkl-2017a.lua", "3.0beta-gimkl-2017a", "4.0.1-gimkl-2020a" ], @@ -20608,11 +20440,11 @@ } ], "network_licences": [], - "default": "2.1-gimkl-2017a.lua", + "default": "4.0.1-gimkl-2020a", "default_type": "latest", "last_updated": 1698372403, "modulefile_text": "", - "module_path": "/opt/nesi/CS400_centos7_bdw/modules/all/Relion/2.1-gimkl-2017a.lua.bak_20180822151823", + "module_path": "/opt/nesi/CS400_centos7_bdw/modules/bio/Relion/4.0.1-gimkl-2020a.lua", "force_hide": "False", "force_show": "False" }, @@ -21636,7 +21468,6 @@ "homepage": "http://www.scons.org/", "support": "", "versions": [ - "3.0", "3.0.1" ], "admin_list": [], @@ -22871,28 +22702,6 @@ "force_hide": "False", "force_show": "False" }, - "splat": { - "description": "", - "domains": [ - "tools" - ], - "extensions": [], - "licence_type": "", - "homepage": "", - "support": "", - "versions": [ - "1.0" - ], - "admin_list": [], - "network_licences": [], - "default": "1.0", - "default_type": "latest", - "last_updated": 1536906281, - "modulefile_text": "", - "module_path": "/opt/nesi/share/modules/tools/splat/1.0.5", - "force_hide": "False", - "force_show": "False" - }, "spoa": { "description": "c++ implementation of the partial order alignment (POA) algorithm\n which is used to generate consensus sequences", "domains": [ @@ -23011,26 +22820,6 @@ "force_hide": "False", "force_show": "False" }, - "srun-wrapper": { - "description": "", - "domains": [], - "extensions": [], - "licence_type": "", - "homepage": "", - "support": "", - "versions": [ - "1" - ], - "admin_list": [], - "network_licences": [], - "default": "1", - "default_type": "latest", - "last_updated": 1586318946, - "modulefile_text": "", - "module_path": "/opt/nesi/share/modules/all/srun-wrapper/1.0", - "force_hide": "False", - "force_show": "False" - }, "SSAHA2": { "description": "Pairwise sequence alignment program designed for the efficient mapping of sequencing \n reads onto genomic reference sequences.", "domains": [ @@ -24058,7 +23847,6 @@ "2.11.0-gimkl-2020a", "2.13.2-gimkl-2020a", "2.14.0-gimkl-2022a", - "2.8.4-gimkl-2017a.lua", "2.8.4-gimkl-2018b", "2.8.5-gimkl-2018b", "2.8.6-gimkl-2020a" @@ -24072,11 +23860,11 @@ } ], "network_licences": [], - "default": "2.8.4-gimkl-2017a.lua", + "default": "2.13.2-gimkl-2020a", "default_type": "latest", "last_updated": 1669602209, "modulefile_text": "", - "module_path": "/opt/nesi/CS400_centos7_bdw/modules/all/Trinity/2.8.4-gimkl-2017a.lua.bak_20190123101343", + "module_path": "/opt/nesi/CS400_centos7_bdw/modules/bio/Trinity/2.13.2-gimkl-2020a.lua", "force_hide": "False", "force_show": "False" }, diff --git a/docs/software_updates.xml b/docs/software_updates.xml index 9d5d3b828..ab6fcc84d 100644 --- a/docs/software_updates.xml +++ b/docs/software_updates.xml @@ -10,7 +10,11 @@ - + + + + + @@ -32,6 +36,8 @@ + + http://docs.nesi.org.nz @@ -43,6 +49,8 @@ + + Automated Software Updates Feed @@ -54,6 +62,8 @@ + + http://www.rssboard.org/rss-specification @@ -65,6 +75,8 @@ + + python-feedgen @@ -76,6 +88,8 @@ + + en @@ -87,6 +101,8 @@ + + Wed, 16 Oct 2024 02:51:48 +0000 @@ -98,6 +114,8 @@ + + @@ -109,6 +127,8 @@ + + @@ -120,6 +140,8 @@ + + Default version of QuickTree changed from 2.5-GCC-11.3.0 to 2.5-GCC-12.3.0. @@ -131,6 +153,8 @@ + + QuickTree @@ -142,6 +166,8 @@ + + defaultChanged @@ -153,6 +179,8 @@ + + Tue, 08 Oct 2024 00:00:00 +1300 @@ -164,12 +192,16 @@ + + A0 + + @@ -186,6 +218,8 @@ + + @@ -197,6 +231,8 @@ + + Default version of QuickTree changed from 2.5-GCC-11.3.0 to 2.5-GCC-12.3.0. @@ -208,6 +244,8 @@ + + QuickTree @@ -219,6 +257,8 @@ + + defaultChanged @@ -230,6 +270,8 @@ + + Tue, 08 Oct 2024 00:00:00 +1300 @@ -241,12 +283,16 @@ + + A1 + + @@ -263,6 +309,8 @@ + + @@ -274,6 +322,8 @@ + + 2.5-GCC-12.3.0 added. @@ -285,6 +335,8 @@ + + QuickTree @@ -296,6 +348,8 @@ + + versionAdded @@ -307,6 +361,8 @@ + + Tue, 08 Oct 2024 00:00:00 +1300 @@ -318,12 +374,16 @@ + + A2 + + @@ -340,6 +400,8 @@ + + @@ -351,6 +413,8 @@ + + Mashtree has been added. @@ -362,6 +426,8 @@ + + Mashtree @@ -373,6 +439,8 @@ + + softwareAdded @@ -384,6 +452,8 @@ + + Tue, 08 Oct 2024 00:00:00 +1300 @@ -395,12 +465,16 @@ + + A3 + + @@ -417,6 +491,8 @@ + + @@ -428,6 +504,8 @@ + + Default version of pauvre changed from 0.2.3-gimkl-2020a-Python-3.8.2 to 0.2.3-gimkl-2020a-Python-3.8.2. @@ -439,6 +517,8 @@ + + pauvre @@ -450,6 +530,8 @@ + + defaultChanged @@ -461,6 +543,8 @@ + + Mon, 16 Sep 2024 00:00:00 +1200 @@ -472,12 +556,16 @@ + + A4 + + @@ -494,6 +582,8 @@ + + @@ -505,6 +595,8 @@ + + 0.2.3-foss-2023a-Python-3.11.6 added. @@ -516,6 +608,8 @@ + + pauvre @@ -527,6 +621,8 @@ + + versionAdded @@ -538,6 +634,8 @@ + + Mon, 16 Sep 2024 00:00:00 +1200 @@ -549,12 +647,16 @@ + + A5 + + @@ -571,6 +673,8 @@ + + @@ -582,6 +686,8 @@ + + Default version of BamTools changed from 2.5.1-gimkl-2018b to 2.5.1-gimkl-2018b. @@ -593,6 +699,8 @@ + + BamTools @@ -604,6 +712,8 @@ + + defaultChanged @@ -615,6 +725,8 @@ + + Mon, 16 Sep 2024 00:00:00 +1200 @@ -626,12 +738,16 @@ + + A6 + + @@ -648,6 +764,8 @@ + + @@ -659,6 +777,8 @@ + + 2.5.2-GCCcore-12.3.0 added. @@ -670,6 +790,8 @@ + + BamTools @@ -681,6 +803,8 @@ + + versionAdded @@ -692,6 +816,8 @@ + + Mon, 16 Sep 2024 00:00:00 +1200 @@ -703,12 +829,16 @@ + + A7 + + @@ -725,6 +855,8 @@ + + @@ -736,6 +868,8 @@ + + Default version of QUAST changed from 5.0.2-gimkl-2018b to 5.2.0-foss-2023a. @@ -747,6 +881,8 @@ + + QUAST @@ -758,6 +894,8 @@ + + defaultChanged @@ -769,6 +907,8 @@ + + Mon, 16 Sep 2024 00:00:00 +1200 @@ -780,12 +920,16 @@ + + A8 + + @@ -802,6 +946,8 @@ + + @@ -813,6 +959,8 @@ + + Default version of QUAST changed from 5.0.2-gimkl-2018b to 5.2.0-foss-2023a. @@ -824,6 +972,8 @@ + + QUAST @@ -835,6 +985,8 @@ + + defaultChanged @@ -846,6 +998,8 @@ + + Mon, 16 Sep 2024 00:00:00 +1200 @@ -857,12 +1011,16 @@ + + A9 + + @@ -879,6 +1037,8 @@ + + @@ -890,6 +1050,8 @@ + + 5.2.0-foss-2023a added. @@ -901,6 +1063,8 @@ + + QUAST @@ -912,6 +1076,8 @@ + + versionAdded @@ -923,6 +1089,8 @@ + + Mon, 16 Sep 2024 00:00:00 +1200 @@ -934,12 +1102,16 @@ + + A10 + + @@ -956,6 +1128,8 @@ + + @@ -967,6 +1141,8 @@ + + Default version of BEDTools changed from 2.28.0-gimkl-2018b to 2.31.1-GCC-12.3.0. @@ -978,6 +1154,8 @@ + + BEDTools @@ -989,6 +1167,8 @@ + + defaultChanged @@ -1000,6 +1180,8 @@ + + Mon, 16 Sep 2024 00:00:00 +1200 @@ -1011,12 +1193,16 @@ + + A11 + + @@ -1033,6 +1219,8 @@ + + @@ -1044,6 +1232,8 @@ + + Default version of BEDTools changed from 2.28.0-gimkl-2018b to 2.31.1-GCC-12.3.0. @@ -1055,6 +1245,8 @@ + + BEDTools @@ -1066,6 +1258,8 @@ + + defaultChanged @@ -1077,6 +1271,8 @@ + + Mon, 16 Sep 2024 00:00:00 +1200 @@ -1088,12 +1284,16 @@ + + A11 + + @@ -1110,6 +1310,8 @@ + + @@ -1121,6 +1323,8 @@ + + 2.31.1-GCC-12.3.0 added. @@ -1132,6 +1336,8 @@ + + BEDTools @@ -1143,6 +1349,8 @@ + + versionAdded @@ -1154,6 +1362,8 @@ + + Mon, 16 Sep 2024 00:00:00 +1200 @@ -1165,12 +1375,16 @@ + + A12 + + @@ -1187,6 +1401,8 @@ + + @@ -1198,6 +1414,8 @@ + + Default version of MultiQC changed from 1.13-gimkl-2022a-Python-3.10.5 to 1.13-gimkl-2022a-Python-3.10.5. @@ -1209,6 +1427,8 @@ + + MultiQC @@ -1220,6 +1440,8 @@ + + defaultChanged @@ -1231,6 +1453,8 @@ + + Mon, 16 Sep 2024 00:00:00 +1200 @@ -1242,12 +1466,16 @@ + + A13 + + @@ -1264,6 +1492,8 @@ + + @@ -1275,6 +1505,8 @@ + + 1.24.1-foss-2023a-Python-3.11.6 added. @@ -1286,6 +1518,8 @@ + + MultiQC @@ -1297,6 +1531,8 @@ + + versionAdded @@ -1308,6 +1544,8 @@ + + Mon, 16 Sep 2024 00:00:00 +1200 @@ -1319,12 +1557,16 @@ + + A14 + + @@ -1341,6 +1583,8 @@ + + @@ -1352,6 +1596,8 @@ + + Default version of NanoPlot changed from 1.41.0-gimkl-2022a-Python-3.10.5 to 1.41.0-gimkl-2022a-Python-3.10.5. @@ -1363,6 +1609,8 @@ + + NanoPlot @@ -1374,6 +1622,8 @@ + + defaultChanged @@ -1385,6 +1635,8 @@ + + Mon, 16 Sep 2024 00:00:00 +1200 @@ -1396,12 +1648,16 @@ + + A15 + + @@ -1418,6 +1674,8 @@ + + @@ -1429,6 +1687,8 @@ + + 1.43.0-foss-2023a-Python-3.11.6 added. @@ -1440,6 +1700,8 @@ + + NanoPlot @@ -1451,6 +1713,8 @@ + + versionAdded @@ -1462,6 +1726,8 @@ + + Mon, 16 Sep 2024 00:00:00 +1200 @@ -1473,12 +1739,16 @@ + + A16 + + @@ -1495,6 +1765,8 @@ + + @@ -1506,6 +1778,8 @@ + + Default version of TSEBRA changed from 1.1.0-gimkl-2022a-Python-3.10.5 to 1.1.0-gimkl-2022a-Python-3.10.5. @@ -1517,6 +1791,8 @@ + + TSEBRA @@ -1528,6 +1804,8 @@ + + defaultChanged @@ -1539,6 +1817,8 @@ + + Tue, 15 Oct 2024 00:00:00 +1300 @@ -1550,12 +1830,16 @@ + + A17 + + @@ -1572,6 +1856,8 @@ + + @@ -1583,6 +1869,8 @@ + + 1.1.2.5-gimkl-2022a-Python-3.11.3 added. @@ -1594,6 +1882,8 @@ + + TSEBRA @@ -1605,6 +1895,8 @@ + + versionAdded @@ -1616,6 +1908,8 @@ + + Tue, 15 Oct 2024 00:00:00 +1300 @@ -1627,12 +1921,16 @@ + + A18 + + @@ -1649,6 +1947,8 @@ + + @@ -1660,6 +1960,8 @@ + + Default version of TSEBRA changed from 1.1.0-gimkl-2022a-Python-3.10.5 to 1.1.0-gimkl-2022a-Python-3.10.5. @@ -1671,6 +1973,8 @@ + + TSEBRA @@ -1682,6 +1986,8 @@ + + defaultChanged @@ -1693,6 +1999,8 @@ + + Wed, 16 Oct 2024 00:00:00 +1300 @@ -1704,12 +2012,16 @@ + + A19 + + @@ -1726,6 +2038,8 @@ + + @@ -1737,6 +2051,8 @@ + + 1.1.2.5-gimkl-2022a-Python-3.11.3 added. @@ -1748,6 +2064,8 @@ + + TSEBRA @@ -1759,6 +2077,8 @@ + + versionAdded @@ -1770,6 +2090,8 @@ + + Wed, 16 Oct 2024 00:00:00 +1300 @@ -1781,12 +2103,16 @@ + + A20 + + @@ -1803,6 +2129,8 @@ + + @@ -1814,6 +2142,8 @@ + + Default version of binutils changed from 2.27-GCCcore-6.3.0 to 2.26-GCCcore-5.4.0. @@ -1825,6 +2155,8 @@ + + binutils @@ -1836,6 +2168,8 @@ + + defaultChanged @@ -1847,6 +2181,8 @@ + + Wed, 16 Oct 2024 00:00:00 +1300 @@ -1858,12 +2194,16 @@ + + A21 + + @@ -1880,6 +2220,8 @@ + + @@ -1891,6 +2233,8 @@ + + make has been removed. @@ -1902,6 +2246,8 @@ + + make @@ -1913,6 +2259,8 @@ + + softwareRemoved @@ -1924,6 +2272,8 @@ + + Wed, 16 Oct 2024 00:00:00 +1300 @@ -1935,12 +2285,16 @@ + + A22 + + @@ -1957,6 +2311,8 @@ + + @@ -1968,6 +2324,8 @@ + + Rose has been removed. @@ -1979,6 +2337,8 @@ + + Rose @@ -1990,6 +2350,8 @@ + + softwareRemoved @@ -2001,6 +2363,8 @@ + + Wed, 16 Oct 2024 00:00:00 +1300 @@ -2012,12 +2376,16 @@ + + A23 + + @@ -2034,6 +2402,8 @@ + + @@ -2045,6 +2415,8 @@ + + Loki has been removed. @@ -2056,6 +2428,8 @@ + + Loki @@ -2067,6 +2441,8 @@ + + softwareRemoved @@ -2078,6 +2454,8 @@ + + Wed, 16 Oct 2024 00:00:00 +1300 @@ -2089,12 +2467,16 @@ + + A24 + + @@ -2111,6 +2493,8 @@ + + @@ -2122,6 +2506,8 @@ + + FPM has been removed. @@ -2133,6 +2519,8 @@ + + FPM @@ -2144,6 +2532,8 @@ + + softwareRemoved @@ -2155,6 +2545,8 @@ + + Wed, 16 Oct 2024 00:00:00 +1300 @@ -2166,12 +2558,16 @@ + + A25 + + @@ -2188,6 +2584,8 @@ + + @@ -2199,6 +2597,8 @@ + + ARCSI has been removed. @@ -2210,6 +2610,8 @@ + + ARCSI @@ -2221,6 +2623,8 @@ + + softwareRemoved @@ -2232,6 +2636,8 @@ + + Wed, 16 Oct 2024 00:00:00 +1300 @@ -2243,12 +2649,16 @@ + + A26 + + @@ -2265,6 +2675,8 @@ + + @@ -2276,6 +2688,8 @@ + + Anaconda3-Geo2 has been removed. @@ -2287,6 +2701,8 @@ + + Anaconda3-Geo2 @@ -2298,6 +2714,8 @@ + + softwareRemoved @@ -2309,6 +2727,8 @@ + + Wed, 16 Oct 2024 00:00:00 +1300 @@ -2320,12 +2740,16 @@ + + A27 + + @@ -2342,6 +2766,8 @@ + + @@ -2353,6 +2779,8 @@ + + Cannoli has been removed. @@ -2364,6 +2792,8 @@ + + Cannoli @@ -2375,6 +2805,8 @@ + + softwareRemoved @@ -2386,6 +2818,8 @@ + + Wed, 16 Oct 2024 00:00:00 +1300 @@ -2397,12 +2831,16 @@ + + A28 + + @@ -2419,6 +2857,8 @@ + + @@ -2430,6 +2870,8 @@ + + Augustus has been removed. @@ -2441,6 +2883,8 @@ + + Augustus @@ -2452,6 +2896,8 @@ + + softwareRemoved @@ -2463,6 +2909,8 @@ + + Wed, 16 Oct 2024 00:00:00 +1300 @@ -2474,12 +2922,16 @@ + + A29 + + @@ -2496,6 +2948,8 @@ + + @@ -2507,6 +2961,8 @@ + + OpenCMISS has been removed. @@ -2518,6 +2974,8 @@ + + OpenCMISS @@ -2529,6 +2987,8 @@ + + softwareRemoved @@ -2540,6 +3000,8 @@ + + Wed, 16 Oct 2024 00:00:00 +1300 @@ -2551,12 +3013,16 @@ + + A30 + + @@ -2573,6 +3039,8 @@ + + @@ -2584,6 +3052,8 @@ + + Transrate has been removed. @@ -2595,6 +3065,8 @@ + + Transrate @@ -2606,6 +3078,8 @@ + + softwareRemoved @@ -2617,6 +3091,8 @@ + + Wed, 16 Oct 2024 00:00:00 +1300 @@ -2628,12 +3104,16 @@ + + A31 + + @@ -2650,6 +3130,8 @@ + + @@ -2661,6 +3143,8 @@ + + Amber has been removed. @@ -2672,6 +3156,8 @@ + + Amber @@ -2683,6 +3169,8 @@ + + softwareRemoved @@ -2694,6 +3182,8 @@ + + Wed, 16 Oct 2024 00:00:00 +1300 @@ -2705,12 +3195,16 @@ + + A32 + + @@ -2727,6 +3221,8 @@ + + @@ -2738,6 +3234,8 @@ + + blasr_libcpp has been removed. @@ -2749,6 +3247,8 @@ + + blasr_libcpp @@ -2760,6 +3260,8 @@ + + softwareRemoved @@ -2771,6 +3273,8 @@ + + Wed, 16 Oct 2024 00:00:00 +1300 @@ -2782,12 +3286,16 @@ + + A33 + + @@ -2804,6 +3312,8 @@ + + @@ -2815,6 +3325,8 @@ + + branches has been removed. @@ -2826,6 +3338,8 @@ + + branches @@ -2837,6 +3351,8 @@ + + softwareRemoved @@ -2848,6 +3364,8 @@ + + Wed, 16 Oct 2024 00:00:00 +1300 @@ -2859,12 +3377,16 @@ + + A34 + + @@ -2881,6 +3403,8 @@ + + @@ -2892,6 +3416,8 @@ + + PBJelly has been removed. @@ -2903,6 +3429,8 @@ + + PBJelly @@ -2914,6 +3442,8 @@ + + softwareRemoved @@ -2925,6 +3455,8 @@ + + Wed, 16 Oct 2024 00:00:00 +1300 @@ -2936,12 +3468,16 @@ + + A35 + + @@ -2958,6 +3494,8 @@ + + @@ -2969,6 +3507,8 @@ + + SOAPdenovo2 has been removed. @@ -2980,6 +3520,8 @@ + + SOAPdenovo2 @@ -2991,6 +3533,8 @@ + + softwareRemoved @@ -3002,6 +3546,8 @@ + + Wed, 16 Oct 2024 00:00:00 +1300 @@ -3013,12 +3559,16 @@ + + A36 + + @@ -3035,6 +3585,8 @@ + + @@ -3046,6 +3598,8 @@ + + TensorBoard has been removed. @@ -3057,6 +3611,8 @@ + + TensorBoard @@ -3068,6 +3624,8 @@ + + softwareRemoved @@ -3079,6 +3637,8 @@ + + Wed, 16 Oct 2024 00:00:00 +1300 @@ -3090,12 +3650,16 @@ + + A37 + + @@ -3112,6 +3676,8 @@ + + @@ -3123,6 +3689,8 @@ + + XGKS has been removed. @@ -3134,6 +3702,8 @@ + + XGKS @@ -3145,6 +3715,8 @@ + + softwareRemoved @@ -3156,6 +3728,8 @@ + + Wed, 16 Oct 2024 00:00:00 +1300 @@ -3167,12 +3741,16 @@ + + A38 + + @@ -3189,6 +3767,8 @@ + + @@ -3200,6 +3780,8 @@ + + pyseer has been removed. @@ -3211,6 +3793,8 @@ + + pyseer @@ -3222,6 +3806,8 @@ + + softwareRemoved @@ -3233,6 +3819,8 @@ + + Wed, 16 Oct 2024 00:00:00 +1300 @@ -3244,12 +3832,16 @@ + + A39 + + @@ -3266,6 +3858,8 @@ + + @@ -3277,6 +3871,8 @@ + + BLASR has been removed. @@ -3288,6 +3884,8 @@ + + BLASR @@ -3299,6 +3897,8 @@ + + softwareRemoved @@ -3310,6 +3910,8 @@ + + Wed, 16 Oct 2024 00:00:00 +1300 @@ -3321,12 +3923,16 @@ + + A40 + + @@ -3343,6 +3949,8 @@ + + @@ -3354,6 +3962,8 @@ + + Octopus has been removed. @@ -3365,6 +3975,8 @@ + + Octopus @@ -3376,6 +3988,8 @@ + + softwareRemoved @@ -3387,6 +4001,8 @@ + + Wed, 16 Oct 2024 00:00:00 +1300 @@ -3398,12 +4014,16 @@ + + A41 + + @@ -3420,6 +4040,8 @@ + + @@ -3431,6 +4053,8 @@ + + BerkeleyGW has been removed. @@ -3442,6 +4066,8 @@ + + BerkeleyGW @@ -3453,6 +4079,8 @@ + + softwareRemoved @@ -3464,6 +4092,8 @@ + + Wed, 16 Oct 2024 00:00:00 +1300 @@ -3475,12 +4105,16 @@ + + A42 + + @@ -3497,6 +4131,8 @@ + + @@ -3508,6 +4144,8 @@ + + networkx has been removed. @@ -3519,6 +4157,8 @@ + + networkx @@ -3530,6 +4170,8 @@ + + softwareRemoved @@ -3541,6 +4183,8 @@ + + Wed, 16 Oct 2024 00:00:00 +1300 @@ -3552,12 +4196,16 @@ + + A43 + + @@ -3574,6 +4222,8 @@ + + @@ -3585,6 +4235,8 @@ + + DendroPy has been removed. @@ -3596,6 +4248,8 @@ + + DendroPy @@ -3607,6 +4261,8 @@ + + softwareRemoved @@ -3618,6 +4274,8 @@ + + Wed, 16 Oct 2024 00:00:00 +1300 @@ -3629,12 +4287,16 @@ + + A44 + + @@ -3651,6 +4313,8 @@ + + @@ -3662,6 +4326,8 @@ + + motif has been removed. @@ -3673,6 +4339,8 @@ + + motif @@ -3684,6 +4352,8 @@ + + softwareRemoved @@ -3695,6 +4365,8 @@ + + Wed, 16 Oct 2024 00:00:00 +1300 @@ -3706,12 +4378,16 @@ + + A45 + + @@ -3728,6 +4404,8 @@ + + @@ -3739,6 +4417,8 @@ + + skani has been added. @@ -3750,6 +4430,8 @@ + + skani @@ -3761,6 +4443,8 @@ + + softwareAdded @@ -3772,6 +4456,8 @@ + + Wed, 16 Oct 2024 00:00:00 +1300 @@ -3783,12 +4469,16 @@ + + A46 + + @@ -3805,6 +4495,8 @@ + + @@ -3816,6 +4508,8 @@ + + Default version of Flye changed from 2.9.3-gimkl-2022a-Python-3.11.3 to 2.9.5-foss-2023a-Python-3.11.6. @@ -3827,6 +4521,8 @@ + + Flye @@ -3838,6 +4534,8 @@ + + defaultChanged @@ -3849,6 +4547,8 @@ + + Thu, 10 Oct 2024 00:00:00 +1300 @@ -3860,12 +4560,16 @@ + + A47 + + @@ -3882,6 +4586,8 @@ + + @@ -3893,6 +4599,8 @@ + + 2.9.5-foss-2023a-Python-3.11.6 added. @@ -3904,6 +4612,8 @@ + + Flye @@ -3915,6 +4625,8 @@ + + versionAdded @@ -3926,6 +4638,8 @@ + + Thu, 10 Oct 2024 00:00:00 +1300 @@ -3937,12 +4651,16 @@ + + A48 + + @@ -3950,16 +4668,301 @@ + + + + FileSender has been added. + + softwareAdded + + FileSender + + Thu, 24 Oct 2024 11:16:47 -0000 + + Send large files quickly and securely using REANNZ FileSender. https://www.reannz.co.nz/products-and-services/filesender/ This new module can be loaded with <pre><code>module load FileSender/2.49.0-foss-2023a</code></pre> + + A59 + + + + + + + libsodium has been added. + softwareAdded + libsodium + Wed, 06 Nov 2024 15:23:08 -0000 + library for encryption, decryption, signatures, password hashing and more. +https://doc.libsodium.org/ +This new module can be loaded with <pre><code>module load libsodium/1.0.18</code></pre> + A60 + + + NextPolish2 has been added. + softwareAdded + NextPolish2 + Wed, 06 Nov 2024 15:23:08 -0000 + a fast and efficient genome polishing tool for long-read assembly +https://github.com/Nextomics/NextPolish2 +This new module can be loaded with <pre><code>module load NextPolish2/0.2.1-foss-2023a</code></pre> + A61 + + + matlab-proxy has been added. + softwareAdded + matlab-proxy + Wed, 06 Nov 2024 15:23:08 -0000 + Python package which enables you to launch MATLAB and access it from a web browser. +https://github.com/mathworks/matlab-proxy +This new module can be loaded with <pre><code>module load matlab-proxy/0.23.1-foss-2023a</code></pre> + A62 + + + BreakDancer has been removed. + softwareRemoved + BreakDancer + Wed, 06 Nov 2024 15:23:08 -0000 + BreakDancer has been removed and can no longer be accessed via <pre><code>module load BreakDancer</code>/<pre> + A63 + + + libxml++ has been removed. + softwareRemoved + libxml++ + Wed, 06 Nov 2024 15:23:08 -0000 + libxml++ has been removed and can no longer be accessed via <pre><code>module load libxml++</code>/<pre> + A64 + + + srun-wrapper has been removed. + softwareRemoved + srun-wrapper + Wed, 06 Nov 2024 15:23:08 -0000 + srun-wrapper has been removed and can no longer be accessed via <pre><code>module load srun-wrapper</code>/<pre> + A65 + + + NONMEM has been removed. + softwareRemoved + NONMEM + Wed, 06 Nov 2024 15:23:08 -0000 + NONMEM has been removed and can no longer be accessed via <pre><code>module load NONMEM</code>/<pre> + A66 + + + splat has been removed. + softwareRemoved + splat + Wed, 06 Nov 2024 15:23:08 -0000 + splat has been removed and can no longer be accessed via <pre><code>module load splat</code>/<pre> + A67 + + + libsigc++ has been removed. + softwareRemoved + libsigc++ + Wed, 06 Nov 2024 15:23:08 -0000 + libsigc++ has been removed and can no longer be accessed via <pre><code>module load libsigc++</code>/<pre> + A68 + + + Gaussian has been removed. + softwareRemoved + Gaussian + Wed, 06 Nov 2024 15:23:08 -0000 + Gaussian has been removed and can no longer be accessed via <pre><code>module load Gaussian</code>/<pre> + A69 + + + geany has been removed. + softwareRemoved + geany + Wed, 06 Nov 2024 15:23:08 -0000 + geany has been removed and can no longer be accessed via <pre><code>module load geany</code>/<pre> + A70 + + + nearline has been removed. + softwareRemoved + nearline + Wed, 06 Nov 2024 15:23:08 -0000 + nearline has been removed and can no longer be accessed via <pre><code>module load nearline</code>/<pre> + A71 + + + hooks has been removed. + softwareRemoved + hooks + Wed, 06 Nov 2024 15:23:08 -0000 + hooks has been removed and can no longer be accessed via <pre><code>module load hooks</code>/<pre> + A72 + + + GLibmm has been removed. + softwareRemoved + GLibmm + Wed, 06 Nov 2024 15:23:08 -0000 + GLibmm has been removed and can no longer be accessed via <pre><code>module load GLibmm</code>/<pre> + A73 + + + nano has been removed. + softwareRemoved + nano + Wed, 06 Nov 2024 15:23:08 -0000 + nano has been removed and can no longer be accessed via <pre><code>module load nano</code>/<pre> + A74 + + + Default version of Basilisk has changed + defaultChanged + Basilisk + Wed, 06 Nov 2024 15:23:08 -0000 + The default version of Basilisk has changed from 20200620-gimpi-2020 to 20180226-gimpi-2018b, this is the version that will be loaded when you run <code>module load Basilisk</code>. +If you wish to continue using 20200620-gimpi-2020 in any of your scripts, make sure to change them to <code>module load Basilisk/20200620-gimpi-2020</code> + A75 + + + globus-compute-endpoint/2.30.1-foss-2023a-Python-3.11.6 added. + versionAdded + globus-compute-endpoint + Wed, 06 Nov 2024 15:23:08 -0000 + globus-compute-endpoint has been updated with a new version, 2.30.1-foss-2023a-Python-3.11.6. <pre><code>module load globus-compute-endpoint/2.30.1-foss-2023a-Python-3.11.6</code>/<pre> + A76 + + + Default version of globus-compute-endpoint has changed + defaultChanged + globus-compute-endpoint + Wed, 06 Nov 2024 15:23:08 -0000 + The default version of globus-compute-endpoint has changed from 2.24.0-gimkl-2022a-Python-3.10.5 to 2.24.0-gimkl-2022a-Python-3.10.5, this is the version that will be loaded when you run <code>module load globus-compute-endpoint</code>. +If you wish to continue using 2.24.0-gimkl-2022a-Python-3.10.5 in any of your scripts, make sure to change them to <code>module load globus-compute-endpoint/2.24.0-gimkl-2022a-Python-3.10.5</code> + A77 + + + Default version of GDAL has changed + defaultChanged + GDAL + Wed, 06 Nov 2024 15:23:08 -0000 + The default version of GDAL has changed from 3.0.4-gimkl-2020a.lua to 2.2.2-gimkl-2017a-GEOS-3.5.1, this is the version that will be loaded when you run <code>module load GDAL</code>. +If you wish to continue using 3.0.4-gimkl-2020a.lua in any of your scripts, make sure to change them to <code>module load GDAL/3.0.4-gimkl-2020a.lua</code> + A78 + + + Default version of Trinity has changed + defaultChanged + Trinity + Wed, 06 Nov 2024 15:23:08 -0000 + The default version of Trinity has changed from 2.8.4-gimkl-2017a.lua to 2.13.2-gimkl-2020a, this is the version that will be loaded when you run <code>module load Trinity</code>. +If you wish to continue using 2.8.4-gimkl-2017a.lua in any of your scripts, make sure to change them to <code>module load Trinity/2.8.4-gimkl-2017a.lua</code> + A79 + + + Default version of EasyBuild has changed + defaultChanged + EasyBuild + Wed, 06 Nov 2024 15:23:08 -0000 + The default version of EasyBuild has changed from 4.7 to 4.8.1, this is the version that will be loaded when you run <code>module load EasyBuild</code>. +If you wish to continue using 4.7 in any of your scripts, make sure to change them to <code>module load EasyBuild/4.7</code> + A80 + + + modkit/0.4.1-GCC-12.3.0 added. + versionAdded + modkit + Wed, 06 Nov 2024 15:23:08 -0000 + modkit has been updated with a new version, 0.4.1-GCC-12.3.0. <pre><code>module load modkit/0.4.1-GCC-12.3.0</code>/<pre> + A81 + + + Default version of modkit has changed + defaultChanged + modkit + Wed, 06 Nov 2024 15:23:08 -0000 + The default version of modkit has changed from 0.2.5-GCC-12.3.0 to 0.2.5-GCC-12.3.0, this is the version that will be loaded when you run <code>module load modkit</code>. +If you wish to continue using 0.2.5-GCC-12.3.0 in any of your scripts, make sure to change them to <code>module load modkit/0.2.5-GCC-12.3.0</code> + A82 + + + Default version of prokka has changed + defaultChanged + prokka + Wed, 06 Nov 2024 15:23:08 -0000 + The default version of prokka has changed from 1.13.4-gimkl-2018b.lua to 1.14.5-GCC-9.2.0, this is the version that will be loaded when you run <code>module load prokka</code>. +If you wish to continue using 1.13.4-gimkl-2018b.lua in any of your scripts, make sure to change them to <code>module load prokka/1.13.4-gimkl-2018b.lua</code> + A83 + + + Default version of Kraken2 has changed + defaultChanged + Kraken2 + Wed, 06 Nov 2024 15:23:08 -0000 + The default version of Kraken2 has changed from 2.0.7-beta-gimkl-2017a.lua to 2.0.8-beta-GCC-9.2.0, this is the version that will be loaded when you run <code>module load Kraken2</code>. +If you wish to continue using 2.0.7-beta-gimkl-2017a.lua in any of your scripts, make sure to change them to <code>module load Kraken2/2.0.7-beta-gimkl-2017a.lua</code> + A84 + + + Nextflow/24.04.4 added. + versionAdded + Nextflow + Wed, 06 Nov 2024 15:23:08 -0000 + Nextflow has been updated with a new version, 24.04.4. <pre><code>module load Nextflow/24.04.4</code>/<pre> + A85 + + + Default version of Nextflow has changed + defaultChanged + Nextflow + Wed, 06 Nov 2024 15:23:08 -0000 + The default version of Nextflow has changed from 22.04.3 to 22.04.3, this is the version that will be loaded when you run <code>module load Nextflow</code>. +If you wish to continue using 22.04.3 in any of your scripts, make sure to change them to <code>module load Nextflow/22.04.3</code> + A86 + + + Default version of forge has changed + defaultChanged + forge + Wed, 06 Nov 2024 15:23:08 -0000 + The default version of forge has changed from 21.1.3.lua to 20.0.2, this is the version that will be loaded when you run <code>module load forge</code>. +If you wish to continue using 21.1.3.lua in any of your scripts, make sure to change them to <code>module load forge/21.1.3.lua</code> + A87 + + + Default version of Relion has changed + defaultChanged + Relion + Wed, 06 Nov 2024 15:23:08 -0000 + The default version of Relion has changed from 2.1-gimkl-2017a.lua to 4.0.1-gimkl-2020a, this is the version that will be loaded when you run <code>module load Relion</code>. +If you wish to continue using 2.1-gimkl-2017a.lua in any of your scripts, make sure to change them to <code>module load Relion/2.1-gimkl-2017a.lua</code> + A88 + + + Default version of Python-Geo has changed + defaultChanged + Python-Geo + Wed, 06 Nov 2024 15:23:08 -0000 + The default version of Python-Geo has changed from 3.8.2-gimkl-2020 to 3.8.2-gimkl-2020a, this is the version that will be loaded when you run <code>module load Python-Geo</code>. +If you wish to continue using 3.8.2-gimkl-2020 in any of your scripts, make sure to change them to <code>module load Python-Geo/3.8.2-gimkl-2020</code> + A89 + + + Default version of imkl-FFTW has changed + defaultChanged + imkl-FFTW + Wed, 06 Nov 2024 15:23:08 -0000 + The default version of imkl-FFTW has changed from 2022.0.2-iimpi-2022a to 2022.0.2-gimpi-2022a, this is the version that will be loaded when you run <code>module load imkl-FFTW</code>. +If you wish to continue using 2022.0.2-iimpi-2022a in any of your scripts, make sure to change them to <code>module load imkl-FFTW/2022.0.2-iimpi-2022a</code> + A90 @@ -3967,6 +4970,8 @@ This new module can be loaded with <pre><code>module load FileSender + +