diff --git a/docs/assets/glossary/dictionary.txt b/docs/assets/glossary/dictionary.txt index 21f596f52..540f90e19 100644 --- a/docs/assets/glossary/dictionary.txt +++ b/docs/assets/glossary/dictionary.txt @@ -8,8 +8,6 @@ ACLs ACL ACTC's ACTC -ADAM's -ADAM AGAT's AGAT AGDR @@ -42,8 +40,6 @@ APR's APR APR-util's APR-util -ARCSI's -ARCSI ARIBA's ARIBA ASAGI's @@ -69,17 +65,9 @@ AlphaFold2DB's AlphaFold2DB AlwaysIntelMKL's AlwaysIntelMKL -Amber's -Amber Amdahl Anaconda3's Anaconda3 -Anaconda3-Geo's -Anaconda3-Geo -Anaconda3-Geo2's -Anaconda3-Geo2 -Anaconda3_Geo2's -Anaconda3_Geo2 Aotearoa Apache Apptainer's @@ -91,8 +79,6 @@ Arrow Aspera Aspera-CLI's Aspera-CLI -Augustus's -Augustus AutoDock AutoDock-GPU's AutoDock-GPU @@ -117,8 +103,6 @@ BEEF BGC-Bayesian-genomic-clines's BGC-Bayesian-genomic-clines BLAS -BLASR's -BLASR BLAST's BLAST BLASTDB's @@ -151,10 +135,6 @@ Bazel's Bazel Beagle's Beagle -BerkeleyGW's -BerkeleyGW -Berkeley_UPC's -Berkeley_UPC BiG-SCAPE's BiG-SCAPE Bifrost's @@ -163,8 +143,6 @@ Bio-DB-BigFile's Bio-DB-BigFile Bio-DB-HTS's Bio-DB-HTS -BioConductor's -BioConductor BioPP's BioPP Bioconductor @@ -236,8 +214,6 @@ CUDA CUnit's CUnit CWL -Cannoli's -Cannoli Canu's Canu CapnProto's @@ -277,8 +253,6 @@ CoverM's CoverM CppUnit's CppUnit -CubeGUI's -CubeGUI CubeLib's CubeLib CubeWriter's @@ -294,8 +268,6 @@ DAS_Tool's DAS_Tool DB's DB -DBG2OLC's -DBG2OLC DBus's DBus DCV @@ -305,8 +277,6 @@ DIAMOND's DIAMOND DISCOVARdenovo's DISCOVARdenovo -DMTCP's -DMTCP DOI DRAM's DRAM @@ -330,8 +300,6 @@ Delft3D_FM's Delft3D_FM Delly's Delly -DendroPy's -DendroPy Dorado's Dorado Doxygen's @@ -344,14 +312,10 @@ EIGENSOFT's EIGENSOFT ELPA's ELPA -EMAN's -EMAN EMAN2's EMAN2 EMBOSS's EMBOSS -EMIRGE's -EMIRGE ENMTML's ENMTML EOL @@ -364,14 +328,8 @@ EasyBuild Easybuild Eigen's Eigen -Elmer's -Elmer Embree's Embree -EnergyPlus's -EnergyPlus -ErlangOTP's -ErlangOTP EukRep-EukCC's EukRep-EukCC ExaBayes's @@ -404,8 +362,6 @@ FIGARO's FIGARO FLTK's FLTK -FPM's -FPM FTE FTGL's FTGL @@ -421,6 +377,8 @@ FastTree's FastTree File-Rename's File-Rename +FileSender's +FileSender Filtlong's Filtlong FimTyper's @@ -429,13 +387,12 @@ FlexiBLAS's FlexiBLAS Flye's Flye -FoX's -FoX Fortran FragGeneScan's FragGeneScan FreeBayes's FreeBayes +FreeIPA FreeSurfer's FreeSurfer FreeXL's @@ -467,8 +424,6 @@ GLib's GLib GLibmm's GLibmm -GLnexus's -GLnexus GMAP-GSNAP's GMAP-GSNAP GMP's @@ -522,8 +477,6 @@ GenoVi's GenoVi GenomeThreader's GenomeThreader -Gerris's -Gerris GetOrganelle's GetOrganelle GitHub @@ -540,8 +493,6 @@ Graphviz GridRunner Gubbins's Gubbins -Guile's -Guile HCS HDF's HDF @@ -576,8 +527,6 @@ Hypre IBM ICU's ICU -IDBA's -IDBA IDBA-UD's IDBA-UD IGV's @@ -593,8 +542,6 @@ IRkernel's IRkernel ISA-L's ISA-L -IVE's -IVE Illumina ImagMagick ImageMagick's @@ -623,7 +570,6 @@ JsonCpp Julia's Julia Jupyter -JupyterHub's JupyterHub JupyterLab's JupyterLab @@ -686,8 +632,6 @@ LegacySystemLibs's LegacySystemLibs LibTIFF's LibTIFF -Libav's -Libav Libint's Libint Liftoff's @@ -695,8 +639,6 @@ Liftoff LittleCMS's LittleCMS Lmod -Loki's -Loki LongStitch's LongStitch M4's @@ -727,15 +669,11 @@ METIS MKL MMseqs2's MMseqs2 -MOB-suite's -MOB-suite MODFLOW's MODFLOW MPFR's MPFR MPI -MPICH's -MPICH MSMC's MSMC MUMPS's @@ -770,8 +708,6 @@ Maven's Maven MaxBin's MaxBin -Meraculous's -Meraculous Merqury's Merqury Mesa's @@ -790,8 +726,6 @@ MetaPhlAn2's MetaPhlAn2 MetaSV's MetaSV -MetaVelvet's -MetaVelvet Metashape's Metashape Metaxa2's @@ -827,8 +761,6 @@ Monocle3's Monocle3 Mothur's Mothur -MotionCorr's -MotionCorr MrBayes's MrBayes MultiQC's @@ -839,8 +771,6 @@ NAMD's NAMD NASM's NASM -NCARG's -NCARG NCCL's NCCL NCL's @@ -919,18 +849,13 @@ OSU-Micro-Benchmarks OSX OTF2's OTF2 -Octave's -Octave -Octopus's -Octopus +OnDemand OneDrive OpenACC OpenBLAS's OpenBLAS OpenBabel's OpenBabel -OpenCMISS's -OpenCMISS OpenCV's OpenCV OpenFAST's @@ -967,8 +892,6 @@ PAML's PAML PAPI's PAPI -PBJelly's -PBJelly PCIe PCRE's PCRE @@ -982,11 +905,7 @@ PEST++'s PEST++ PETSc's PETSc -PFFT's -PFFT PFR -PGI's -PGI PHASIUS's PHASIUS PLINK's @@ -1013,8 +932,6 @@ Parallel's Parallel ParallelIO's ParallelIO -Paraver's -Paraver Peregrine's Peregrine Perl's @@ -1050,8 +967,6 @@ PyTorch's PyTorch Python's Python -Python-GPU's -Python-GPU Python-Geo's Python-Geo QChem's @@ -1131,12 +1046,8 @@ Riskscape's Riskscape Roary's Roary -Rose's -Rose Rosetta's Rosetta -Rstudio's -Rstudio Ruby's Ruby Rust's @@ -1170,12 +1081,8 @@ SKESA's SKESA SMRT-Link's SMRT-Link -SNVoter's -SNVoter SNVoter-NanoMethPhase's SNVoter-NanoMethPhase -SOAPdenovo2's -SOAPdenovo2 SOCI's SOCI SPAdes's @@ -1206,11 +1113,7 @@ Sambamba ScaLAPAC ScaLAPACK's ScaLAPACK -Scalasca's -Scalasca Schrödinger -Score-P's -Score-P SeisSol's SeisSol SeqAn's @@ -1219,14 +1122,10 @@ SeqAn3's SeqAn3 SeqKit's SeqKit -SeqMonk's -SeqMonk SiBELia's SiBELia Siesta's Siesta -Siesta-Optical's -Siesta-Optical SignalP's SignalP Singularity's @@ -1286,8 +1185,6 @@ TZ Tamaki Tcl's Tcl -TensorBoard's -TensorBoard TensorFlow's TensorFlow TensorRT's @@ -1296,16 +1193,10 @@ Theano's Theano Tk's Tk -TopHat's -TopHat TransDecoder's TransDecoder -Transrate's -Transrate TreeMix's TreeMix -Trilinos's -Trilinos TrimGalore's TrimGalore Trimmomatic's @@ -1392,11 +1283,7 @@ Winnowmap's Winnowmap Wise2's Wise2 -XALT's -XALT XC -XGKS's -XGKS XHMM's XHMM XMDS2's @@ -1416,8 +1303,6 @@ Xquartz YAML YAXT's YAXT -Yade's -Yade Yasm's Yasm Z3's @@ -1428,8 +1313,6 @@ ZeroMQ's ZeroMQ Zip's Zip -Zonation's -Zonation abritamr's abritamr admonition @@ -1459,6 +1342,8 @@ authenticators's authenticators authenticator's authenticator +autoscale +autoscaling azul-zulu's azul-zulu backplane @@ -1481,10 +1366,6 @@ bioawk's bioawk biomolecules biomolecule -blasr_libcpp's -blasr_libcpp -branches's -branches breseq's breseq bsddb3's @@ -1536,16 +1417,12 @@ cuteSV's cuteSV cwltool's cwltool -cylc's -cylc cyvcf2's cyvcf2 dadi's dadi dammit's dammit -datamash's -datamash datasets's datasets dataset @@ -1683,8 +1560,6 @@ googletest's googletest gperf's gperf -grib_api's -grib_api grive2's grive2 gsort's @@ -1733,8 +1608,6 @@ intel's intel intel-compilers's intel-compilers -intltool's -intltool iofbf's iofbf iompi's @@ -1781,8 +1654,6 @@ libarchive's libarchive libcircle's libcircle -libconfig's -libconfig libdeflate's libdeflate libdrm's @@ -1816,8 +1687,6 @@ libiconv libio libjpeg-turbo's libjpeg-turbo -libmatheval's -libmatheval libpciaccess's libpciaccess libpmi's @@ -1868,8 +1737,6 @@ maf_stream's maf_stream magma's magma -make's -make manta's manta mapDamage's @@ -1894,8 +1761,6 @@ miniBUSCO's miniBUSCO miniasm's miniasm -minieigen's -minieigen minimap2's minimap2 miniprot's @@ -1908,8 +1773,6 @@ modkit's modkit mosdepth's mosdepth -motif's -motif mpcci's mpcci mpifileutils's @@ -1952,10 +1815,6 @@ netCDF-C++4's netCDF-C++4 netCDF-Fortran's netCDF-Fortran -nettle's -nettle -networkx's -networkx nga ngā nobackup @@ -1974,8 +1833,6 @@ objects onboarding ont-guppy-gpu's ont-guppy-gpu -openseespy's -openseespy ora padloc's padloc @@ -1985,8 +1842,6 @@ panaroo's panaroo pandoc's pandoc -parallel's -parallel parallel-fastq-dump's parallel-fastq-dump parallelisation @@ -2013,8 +1868,6 @@ pigz's pigz pixman's pixman -pkg-config's -pkg-config pod5's pod5 pplacer's @@ -2039,12 +1892,8 @@ programmes programme prokka's prokka -proovread's -proovread protobuf's protobuf -protobuf-python's -protobuf-python psmc's psmc pstoedit's @@ -2063,8 +1912,6 @@ pycoQC's pycoQC pymol-open-source's pymol-open-source -pyseer's -pyseer pyspoa's pyspoa qcat's @@ -2093,10 +1940,6 @@ rkcommon rnaQUAST's rnaQUAST rollout -rstudio's -rstudio -rstudio-server's -rstudio-server rsync runtime rust-fmlrc's @@ -2125,6 +1968,8 @@ simuG's simuG sismonr's sismonr +skani's +skani slow5tools's slow5tools smafa's @@ -2147,8 +1992,6 @@ spaln's spaln spdlog's spdlog -spglib's -spglib splat's splat spoa's @@ -2187,8 +2030,6 @@ tbb tbl2asn's tbl2asn templating -test's -test tmpfs tmux's tmux @@ -2235,8 +2076,6 @@ x264's x264 x265's x265 -xbitmaps's -xbitmaps xkbcommon's xkbcommon xtb's diff --git a/docs/assets/glossary/snippets.md b/docs/assets/glossary/snippets.md index 2478493dc..addac0613 100644 --- a/docs/assets/glossary/snippets.md +++ b/docs/assets/glossary/snippets.md @@ -572,6 +572,8 @@ fonts in their OpenGL (www.opengl.org) applications. time and memory. *[File-Rename's]: A Perl version of the rename utility, with support for regular expressions. *[File-Rename]: A Perl version of the rename utility, with support for regular expressions. +*[FileSender's]: Send large files quickly and securely using REANNZ FileSender. +*[FileSender]: Send large files quickly and securely using REANNZ FileSender. *[Filtlong's]: Tool for filtering long reads by quality. *[Filtlong]: Tool for filtering long reads by quality. *[FimTyper's]: Identifies the FimH type in total or partial sequenced isolates of E. coli.. @@ -3061,6 +3063,8 @@ reads to a separate FASTQ file. When marking duplicates, samblaster will require *[simuG]: A general-purpose genome simulator *[sismonr's]: Simulation of In Silico Multi-Omic Networks R package. *[sismonr]: Simulation of In Silico Multi-Omic Networks R package. +*[skani's]: accurate, fast nucleotide identity calculation for MAGs, genomes, and databases +*[skani]: accurate, fast nucleotide identity calculation for MAGs, genomes, and databases *[slow5tools's]: Toolkit for converting (FAST5 <-> SLOW5), compressing, viewing, indexing and manipulating data in SLOW5 format. *[slow5tools]: Toolkit for converting (FAST5 <-> SLOW5), compressing, viewing, indexing diff --git a/docs/assets/module-list.json b/docs/assets/module-list.json index 268a3c604..4e2950f8a 100644 --- a/docs/assets/module-list.json +++ b/docs/assets/module-list.json @@ -6608,6 +6608,30 @@ "force_hide": "False", "force_show": "False" }, + "FileSender": { + "description": "Send large files quickly and securely using REANNZ FileSender.", + "domains": [ + "tools" + ], + "extensions": [ + "cryptography-43.0.1" + ], + "licence_type": "", + "homepage": "https://www.reannz.co.nz/products-and-services/filesender/", + "support": "", + "versions": [ + "2.49.0-foss-2023a" + ], + "admin_list": [], + "network_licences": [], + "default": "2.49.0-foss-2023a", + "default_type": "latest", + "last_updated": 1729730894, + "modulefile_text": "", + "module_path": "/opt/nesi/CS400_centos7_bdw/modules/tools/FileSender/2.49.0-foss-2023a.lua", + "force_hide": "False", + "force_show": "False" + }, "Filtlong": { "description": "Tool for filtering long reads by quality.", "domains": [ diff --git a/docs/software_updates.xml b/docs/software_updates.xml index ec4dbdc67..9d5d3b828 100644 --- a/docs/software_updates.xml +++ b/docs/software_updates.xml @@ -2,1082 +2,3974 @@ - + + + + + + + + + + + + + + + + + Software Updates + + + + + + + + http://docs.nesi.org.nz + + + + + + + + Automated Software Updates Feed + + + + + + + + http://www.rssboard.org/rss-specification + + + + + + + + python-feedgen + + + + + + + + en + + + + + + + + Wed, 16 Oct 2024 02:51:48 +0000 + + + + + + + + + + + + + + + + + + + + + + + + Default version of QuickTree changed from 2.5-GCC-11.3.0 to 2.5-GCC-12.3.0. + + + + + + + + QuickTree + + + + + + + + defaultChanged + + + + + + + + Tue, 08 Oct 2024 00:00:00 +1300 + + + + + + + + A0 + + + + + + + + + + + + + + + + - Default version of QuickTree changed from 2.5-GCC-11.3.0 to 2.5-GCC-12.3.0. - QuickTree - defaultChanged - Tue, 08 Oct 2024 00:00:00 +1300 - A1 + Default version of QuickTree changed from 2.5-GCC-11.3.0 to 2.5-GCC-12.3.0. + + + + + - - - - - - 2.5-GCC-12.3.0 added. QuickTree - versionAdded - Tue, 08 Oct 2024 00:00:00 +1300 - A2 - - - - - - Mashtree has been added. + + defaultChanged + + + + - Mashtree - softwareAdded Tue, 08 Oct 2024 00:00:00 +1300 - A3 - - - - - - Default version of pauvre changed from 0.2.3-gimkl-2020a-Python-3.8.2 to 0.2.3-gimkl-2020a-Python-3.8.2. - pauvre - defaultChanged + + A1 - Mon, 16 Sep 2024 00:00:00 +1200 - A4 + + + + + + + + + + + + - 0.2.3-foss-2023a-Python-3.11.6 added. - pauvre - versionAdded - Mon, 16 Sep 2024 00:00:00 +1200 - A5 + 2.5-GCC-12.3.0 added. - - - - - - Default version of BamTools changed from 2.5.1-gimkl-2018b to 2.5.1-gimkl-2018b. - BamTools - defaultChanged - Mon, 16 Sep 2024 00:00:00 +1200 + QuickTree - A6 - - - - - - 2.5.2-GCCcore-12.3.0 added. - BamTools - versionAdded - Mon, 16 Sep 2024 00:00:00 +1200 + versionAdded - A7 - - - - - - Default version of QUAST changed from 5.0.2-gimkl-2018b to 5.2.0-foss-2023a. - QUAST - defaultChanged + Tue, 08 Oct 2024 00:00:00 +1300 - Mon, 16 Sep 2024 00:00:00 +1200 - A8 - - - - - - Default version of QUAST changed from 5.0.2-gimkl-2018b to 5.2.0-foss-2023a. - QUAST - defaultChanged + A2 - Mon, 16 Sep 2024 00:00:00 +1200 - A9 + + + + + + + + + + + + + + + + + + + + + + + + + + + Mashtree has been added. + + + + + + + + + + + Mashtree + + + + + + + + + + + softwareAdded + + + + + + + + + + + Tue, 08 Oct 2024 00:00:00 +1300 + + + + + + + + + + + A3 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + Default version of pauvre changed from 0.2.3-gimkl-2020a-Python-3.8.2 to 0.2.3-gimkl-2020a-Python-3.8.2. + + + + + + + + + + + pauvre + + + + + + + + + + + defaultChanged + + + + + + + + + + + Mon, 16 Sep 2024 00:00:00 +1200 + + + + + + + + + + + A4 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + 0.2.3-foss-2023a-Python-3.11.6 added. + + + + + + + + + + + pauvre + + + + + + + + + + + versionAdded + + + + + + + + + + + Mon, 16 Sep 2024 00:00:00 +1200 + + + + + + + + + + + A5 + + + + + + + + + + + + + + + + + + + + + + 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+ + + + + + + A15 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + 1.43.0-foss-2023a-Python-3.11.6 added. + + + + + + + + + + + NanoPlot + + + + + + + + + + + versionAdded + + + + + + + + + + + Mon, 16 Sep 2024 00:00:00 +1200 + + + + + + + + + + + A16 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + Default version of TSEBRA changed from 1.1.0-gimkl-2022a-Python-3.10.5 to 1.1.0-gimkl-2022a-Python-3.10.5. + + + + + + + + + + + TSEBRA + + + + + + + + + + + defaultChanged + + + + + + + + + + + Tue, 15 Oct 2024 00:00:00 +1300 + + + + + + + + + + + A17 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + 1.1.2.5-gimkl-2022a-Python-3.11.3 added. + + + + + + + + + + + TSEBRA + + + + + + + + + + + versionAdded + + + + + + + + + + + Tue, 15 Oct 2024 00:00:00 +1300 + + + + + + + + + + + A18 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + Default version of TSEBRA changed from 1.1.0-gimkl-2022a-Python-3.10.5 to 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1.13-gimkl-2022a-Python-3.10.5 to 1.13-gimkl-2022a-Python-3.10.5. - MultiQC - defaultChanged + A41 - Mon, 16 Sep 2024 00:00:00 +1200 - A13 + + + + + + + + + + + + - 1.24.1-foss-2023a-Python-3.11.6 added. - MultiQC - versionAdded - Mon, 16 Sep 2024 00:00:00 +1200 - A14 + BerkeleyGW has been removed. - - - - - - Default version of NanoPlot changed from 1.41.0-gimkl-2022a-Python-3.10.5 to 1.41.0-gimkl-2022a-Python-3.10.5. - NanoPlot - defaultChanged - Mon, 16 Sep 2024 00:00:00 +1200 + BerkeleyGW - A15 - - - - - - 1.43.0-foss-2023a-Python-3.11.6 added. - NanoPlot - versionAdded - Mon, 16 Sep 2024 00:00:00 +1200 + softwareRemoved - A16 - - - - - - Default version of TSEBRA changed from 1.1.0-gimkl-2022a-Python-3.10.5 to 1.1.0-gimkl-2022a-Python-3.10.5. - TSEBRA - defaultChanged + Wed, 16 Oct 2024 00:00:00 +1300 - Tue, 15 Oct 2024 00:00:00 +1300 - A17 - - - - - - 1.1.2.5-gimkl-2022a-Python-3.11.3 added. - TSEBRA - versionAdded + A42 - Tue, 15 Oct 2024 00:00:00 +1300 - A18 + + + + + + + + + + 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been removed. - ARCSI - softwareRemoved - Wed, 16 Oct 2024 00:00:00 +1300 + softwareRemoved - A26 - - - - - - Anaconda3-Geo2 has been removed. - Anaconda3-Geo2 - softwareRemoved Wed, 16 Oct 2024 00:00:00 +1300 - A27 - - - - - - Cannoli has been removed. - Cannoli - softwareRemoved + A44 - Wed, 16 Oct 2024 00:00:00 +1300 - A28 + + + + + + + + + + + + + + - - Augustus has been removed. - - Augustus - softwareRemoved - Wed, 16 Oct 2024 00:00:00 +1300 - A29 - - - - - + motif has been removed. - OpenCMISS has been removed. - OpenCMISS - softwareRemoved - Wed, 16 Oct 2024 00:00:00 +1300 - A30 + motif - - - - - - Transrate has been removed. - Transrate - softwareRemoved - Wed, 16 Oct 2024 00:00:00 +1300 + softwareRemoved - A31 - - - - - - Amber has been removed. - Amber - softwareRemoved Wed, 16 Oct 2024 00:00:00 +1300 - A32 - - - - - - blasr_libcpp has been removed. - blasr_libcpp - softwareRemoved + A45 - Wed, 16 Oct 2024 00:00:00 +1300 - A33 + + + + + + + + + + + + + - branches has been 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+ defaultChanged - A41 - - - - - - BerkeleyGW has been removed. - BerkeleyGW - softwareRemoved + Thu, 10 Oct 2024 00:00:00 +1300 - Wed, 16 Oct 2024 00:00:00 +1300 - A42 - - - - - - networkx has been removed. - networkx - softwareRemoved + A47 - Wed, 16 Oct 2024 00:00:00 +1300 - A43 + + + + + + + + + + + + - DendroPy has been removed. - - DendroPy - softwareRemoved - Wed, 16 Oct 2024 00:00:00 +1300 - A44 - - - - - + 2.9.5-foss-2023a-Python-3.11.6 added. - motif has been removed. - motif - softwareRemoved - Wed, 16 Oct 2024 00:00:00 +1300 - A45 + Flye - - - - - - skani has been added. - skani - softwareAdded - Wed, 16 Oct 2024 00:00:00 +1300 + versionAdded - A46 - - - - - - Default version of Flye changed from 2.9.3-gimkl-2022a-Python-3.11.3 to 2.9.5-foss-2023a-Python-3.11.6. - Flye - defaultChanged Thu, 10 Oct 2024 00:00:00 +1300 - A47 - - - - - - 2.9.5-foss-2023a-Python-3.11.6 added. - Flye - versionAdded + + A48 - Thu, 10 Oct 2024 00:00:00 +1300 - A48 + + + + + + + + + FileSender has been added. + softwareAdded + FileSender + Thu, 24 Oct 2024 11:16:47 -0000 + Send large files quickly and securely using REANNZ FileSender. +https://www.reannz.co.nz/products-and-services/filesender/ +This new module can be loaded with <pre><code>module load FileSender/2.49.0-foss-2023a</code></pre> + A59 + + + + + + + + diff --git a/overrides/partials/glossary.html b/overrides/partials/glossary.html index f214dab4d..e55a442b9 100644 --- a/overrides/partials/glossary.html +++ b/overrides/partials/glossary.html @@ -783,6 +783,10 @@ A Perl version of the rename utility, with support for regular expressions. +## FileSender: + +Send large files quickly and securely using REANNZ FileSender. + ## Filtlong: Tool for filtering long reads by quality. @@ -4030,6 +4034,10 @@ Simulation of In Silico Multi-Omic Networks R package. +## skani: + +accurate, fast nucleotide identity calculation for MAGs, genomes, and databases + ## slow5tools: Toolkit for converting (FAST5 <-> SLOW5), compressing, viewing, indexing