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Produce a featureCounts matrix for consensus peak sets #10

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Tomrrr1 opened this issue Feb 22, 2024 · 0 comments
Open

Produce a featureCounts matrix for consensus peak sets #10

Tomrrr1 opened this issue Feb 22, 2024 · 0 comments
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@Tomrrr1
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Tomrrr1 commented Feb 22, 2024

I spoke with Maria, and she said it would be helpful to output a featureCounts matrix for each consensus peak set. A featureCounts matrix will contain, for each consensus peak, the number of reads in the constituent BAM files that overlap with that peak. The matrix should be like this:

bam1 bam2 bam3
peak1 20 30 40
peak2 10 40 40
peak3 80 90 50
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