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I spoke with Maria, and she said it would be helpful to output a featureCounts matrix for each consensus peak set. A featureCounts matrix will contain, for each consensus peak, the number of reads in the constituent BAM files that overlap with that peak. The matrix should be like this:
bam1
bam2
bam3
peak1
20
30
40
peak2
10
40
40
peak3
80
90
50
The text was updated successfully, but these errors were encountered:
I spoke with Maria, and she said it would be helpful to output a featureCounts matrix for each consensus peak set. A featureCounts matrix will contain, for each consensus peak, the number of reads in the constituent BAM files that overlap with that peak. The matrix should be like this:
The text was updated successfully, but these errors were encountered: