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NAMESPACE
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NAMESPACE
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# Generated by roxygen2: do not edit by hand
export("%>%")
export(MotifPeeker)
export(calc_frip)
export(check_ENCODE)
export(check_JASPAR)
export(check_genome_build)
export(denovo_motifs)
export(find_motifs)
export(get_JASPARCORE)
export(get_df_distances)
export(get_df_enrichment)
export(motif_enrichment)
export(motif_similarity)
export(read_motif_file)
export(read_peak_file)
export(save_peak_file)
export(segregate_seqs)
export(summit_to_motif)
import(BiocParallel)
import(dplyr)
import(ggplot2)
import(plotly, except = last_plot)
import(tidyr)
importFrom(BSgenome,getSeq)
importFrom(BiocFileCache,BiocFileCache)
importFrom(BiocFileCache,bfcinfo)
importFrom(BiocFileCache,bfcrpath)
importFrom(BiocParallel,bpnworkers)
importFrom(Biostrings,DNAString)
importFrom(Biostrings,letterFrequency)
importFrom(DT,datatable)
importFrom(GenomeInfoDb,seqlengths)
importFrom(GenomicAlignments,summarizeOverlaps)
importFrom(GenomicRanges,GRanges)
importFrom(GenomicRanges,end)
importFrom(GenomicRanges,findOverlaps)
importFrom(GenomicRanges,mcols)
importFrom(GenomicRanges,seqnames)
importFrom(GenomicRanges,start)
importFrom(GenomicRanges,strand)
importFrom(GenomicRanges,width)
importFrom(IRanges,IRanges)
importFrom(Rsamtools,countBam)
importFrom(S4Vectors,queryHits)
importFrom(S4Vectors,subjectHits)
importFrom(SummarizedExperiment,assay)
importFrom(dplyr,"%>%")
importFrom(heatmaply,heatmaply)
importFrom(htmltools,tagList)
importFrom(htmlwidgets,JS)
importFrom(memes,meme_is_installed)
importFrom(memes,runAme)
importFrom(memes,runFimo)
importFrom(memes,runTomTom)
importFrom(plotly,ggplotly)
importFrom(plotly,layout)
importFrom(plotly,subplot)
importFrom(purrr,map_chr)
importFrom(purrr,map_df)
importFrom(rmarkdown,render)
importFrom(stats,quantile)
importFrom(stats,sd)
importFrom(tidyr,pivot_longer)
importFrom(tools,file_ext)
importFrom(tools,file_path_sans_ext)
importFrom(universalmotif,compare_motifs)
importFrom(universalmotif,read_homer)
importFrom(universalmotif,read_jaspar)
importFrom(universalmotif,read_meme)
importFrom(universalmotif,read_transfac)
importFrom(universalmotif,read_uniprobe)
importFrom(utils,capture.output)
importFrom(utils,packageVersion)
importFrom(utils,read.table)
importFrom(utils,write.table)
importFrom(viridis,scale_color_viridis)
importFrom(viridis,scale_fill_viridis)
importFrom(viridis,viridis)