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Example MRI datasets to test/debug the module #71

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AcastaPaloma opened this issue Sep 25, 2024 · 4 comments
Open

Example MRI datasets to test/debug the module #71

AcastaPaloma opened this issue Sep 25, 2024 · 4 comments
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documentation Improvements or additions to documentation

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@AcastaPaloma
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AcastaPaloma commented Sep 25, 2024

Can anyone provide test files for segmentation? NIIFTI compressed preferably.

@jcohenadad
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Sure! this spine-generic database is public and includes a bunch of derivatives. See also the collection of BIDS example datasets, and many many other examples on OpenNeuro.

P.S. I've renamed this issue so it is easier/more intuitive to find in the future

@jcohenadad jcohenadad changed the title Availability of scan files Example MRI datasets to test/debug the module Sep 25, 2024
@jcohenadad
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Related to #78

@jcohenadad
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There is also the spinalcordtoolbox dummy dataset used for the course, which includes 3 subjects organized according to BIDS @joshuacwnewton can point us to the dataset

@joshuacwnewton
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https://github.com/spinalcordtoolbox/sct_tutorial_data :)

@maxradx maxradx added the documentation Improvements or additions to documentation label Oct 31, 2024
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