references-software-and-data-analysis.bib

@Book{xie_bookdown_2018,
  title = {Bookdown: {{Authoring Books}} and {{Technical Documents}} with {{R Markdown}}},
  author = {Y. Xie},
  year = {2018},
  note = {R package version 0.7},
}

@Book{xie_bookdown_2016,
  address = {Boca Raton},
  title = {Bookdown: {{Authoring Books}} and {{Technical Documents}} with {{R Markdown}}},
  publisher = {{Chapman and Hall/CRC}},
  author = {Y. Xie},
  year = {2016},
  note = {ISBN 978-1138700109},
}
@Book{xie_bookdown_2018,
  title = {Bookdown: {{Authoring Books}} and {{Technical Documents}} with {{R Markdown}}},
  author = {Y. Xie},
  year = {2018},
  note = {R package version 0.7},
}
@Book{chang_shiny_2018,
  title = {Shiny: {{Web Application Framework}} for {{R}}},
  author = {Winston Chang and Joe Cheng and JJ Allaire and Yihui Xie and Jonathan McPherson},
  year = {2018},
  note = {R package version 1.1.0},
}

@Book{xie_bookdown_2016,
  address = {Boca Raton},
  title = {Bookdown: {{Authoring Books}} and {{Technical Documents}} with {{R Markdown}}},
  publisher = {{Chapman and Hall/CRC}},
  author = {Y. Xie},
  year = {2016},
  note = {ISBN 978-1138700109},
}
@Book{aust_citr_2017,
  title = {Citr: '{{RStudio}}' {{Add}}-in to {{Insert Markdown Citations}}},
  author = {Frederik Aust},
  year = {2017},
  note = {R package version 0.2.0.9055},
}
@Book{xie_knitr_2018,
  title = {Knitr: {{A General}}-{{Purpose Package}} for {{Dynamic Report Generation}} in {{R}}},
  author = {Yihui Xie},
  year = {2018},
  note = {R package version 1.20},
}

@Book{xie_dynamic_2015,
  address = {Boca Raton},
  edition = {2nd},
  title = {Dynamic {{Documents}} with {{R}} and Knitr},
  publisher = {{Chapman and Hall/CRC}},
  author = {Yihui Xie},
  year = {2015},
  note = {ISBN 978-1498716963},
}

@InCollection{xie_knitr_2014,
  title = {Knitr: {{A Comprehensive Tool}} for {{Reproducible Research}} in {{R}}},
  booktitle = {Implementing {{Reproducible Computational Research}}},
  publisher = {{Chapman and Hall/CRC}},
  author = {Yihui Xie},
  editor = {Victoria Stodden and Friedrich Leisch and Roger D. Peng},
  year = {2014},
  note = {ISBN 978-1466561595},
}
@Book{allaire_markdown_2017,
  title = {Markdown: '{{Markdown}}' {{Rendering}} for {{R}}},
  author = {JJ Allaire and Jeffrey Horner and Vicent Marti and Natacha Porte},
  year = {2017},
  note = {R package version 0.8},
}
@Book{allaire_rmarkdown_2018,
  title = {Rmarkdown: {{Dynamic Documents}} for {{R}}},
  author = {JJ Allaire and Yihui Xie and Jonathan McPherson and Javier Luraschi and Kevin Ushey and Aron Atkins and Hadley Wickham and Joe Cheng and Winston Chang},
  year = {2018},
  note = {R package version 1.10},
}
@Book{robinson_broom_2018,
  title = {Broom: {{Convert Statistical Analysis Objects}} into {{Tidy Tibbles}}},
  author = {David Robinson and Alex Hayes},
  year = {2018},
  note = {R package version 0.5.0},
}
@Book{wickham_dplyr_2018,
  title = {Dplyr: {{A Grammar}} of {{Data Manipulation}}},
  author = {Hadley Wickham and Romain Fran{\c c}ois and Lionel Henry and Kirill M{\"u}ller},
  year = {2018},
  note = {R package version 0.7.6},
}
@Book{zhu_kableextra_2018,
  title = {{{kableExtra}}: {{Construct Complex Table}} with 'kable' and {{Pipe Syntax}}},
  author = {Hao Zhu},
  year = {2018},
  note = {R package version 0.9.0},
}
@Book{henry_purrr_2018,
  title = {Purrr: {{Functional Programming Tools}}},
  author = {Lionel Henry and Hadley Wickham},
  year = {2018},
  note = {R package version 0.2.5},
}
@Book{wickham_readr_2017,
  title = {Readr: {{Read Rectangular Text Data}}},
  author = {Hadley Wickham and Jim Hester and Romain Francois},
  year = {2017},
  note = {R package version 1.1.1},
}
@Book{gagolewski_r_2018,
  title = {R Package Stringi: {{Character}} String Processing Facilities},
  author = {Marek Gagolewski},
  year = {2018},
}
@Book{wickham_stringr_2018,
  title = {Stringr: {{Simple}}, {{Consistent Wrappers}} for {{Common String Operations}}},
  author = {Hadley Wickham},
  year = {2018},
  note = {R package version 1.3.1},
}
@Book{muller_tibble_2018,
  title = {Tibble: {{Simple Data Frames}}},
  author = {Kirill M{\"u}ller and Hadley Wickham},
  year = {2018},
  note = {R package version 1.4.2},
}
@Book{wickham_tidyr_2018,
  title = {Tidyr: {{Easily Tidy Data}} with 'spread()' and 'Gather()' {{Functions}}},
  author = {Hadley Wickham and Lionel Henry},
  year = {2018},
  note = {R package version 0.8.1},
}
@Book{wickham_devtools_2018,
  title = {Devtools: {{Tools}} to {{Make Developing R Packages Easier}}},
  author = {Hadley Wickham and Jim Hester and Winston Chang},
  year = {2018},
  note = {R package version 1.13.6},
}
@Book{RCoreTeamLanguageEnvironmentStatistical2016,
  location = {{Wien}},
  title = {R: {{A Language}} and {{Environment}} for {{Statistical Computing}}},
  url = {https://www.R-project.org/},
  date = {2016},
  author = {{R Core Team}},
}
@Article{eddelbuettel_rcpp_2011,
  title = {Rcpp: {{Seamless R}} and {{C}}++ {{Integration}}},
  volume = {40},
  url = {http://www.jstatsoft.org/v40/i08/},
  doi = {10.18637/jss.v040.i08},
  number = {8},
  journaltitle = {Journal of Statistical Software},
  date = {2011},
  pages = {1--18},
  author = {Dirk Eddelbuettel and Romain Fran{\c c}ois},
}

@Book{eddelbuettel_seamless_2013,
  location = {{New York}},
  title = {Seamless {{R}} and {{C}}++ {{Integration}} with {{Rcpp}}},
  publisher = {{Springer}},
  date = {2013},
  author = {Dirk Eddelbuettel},
  note = {ISBN 978-1-4614-6867-7},
}

@Article{eddelbuettel_extending_2017,
  title = {Extending {{R}} with {{C}}++: {{A Brief Introduction}} to {{Rcpp}}},
  volume = {5},
  issn = {2167-9843},
  url = {https://doi.org/10.7287/peerj.preprints.3188v1},
  doi = {10.7287/peerj.preprints.3188v1},
  journaltitle = {PeerJ Preprints},
  date = {2017},
  author = {Dirk Eddelbuettel and James Joseph Balamuta},
}
@Book{bache_magrittr_2014,
  title = {Magrittr: {{A Forward}}-{{Pipe Operator}} for {{R}}},
  author = {Stefan Milton Bache and Hadley Wickham},
  year = {2014},
  note = {R package version 1.5},
}
@Book{henry_rlang_2018,
  title = {Rlang: {{Functions}} for {{Base Types}} and {{Core R}} and '{{Tidyverse}}' {{Features}}},
  author = {Lionel Henry and Hadley Wickham},
  year = {2018},
  note = {R package version 0.2.1},
}
@Book{wickham_roxygen2_2017,
  title = {Roxygen2: {{In}}-{{Line Documentation}} for {{R}}},
  author = {Hadley Wickham and Peter Danenberg and Manuel Eugster},
  year = {2017},
  note = {R package version 6.0.1},
}
@Article{wickham_testthat_2011,
  title = {Testthat: {{Get Started}} with {{Testing}}},
  volume = {3},
  journal = {The R Journal},
  author = {Hadley Wickham},
  year = {2011},
  pages = {5-10},
}
@Book{siek_boost_2002,
  address = {Boston},
  series = {C++ in-depth series},
  title = {The Boost Graph Library: User Guide and Reference Manual},
  isbn = {978-0-201-72914-6},
  lccn = {QA76.73.C153 S49 2002},
  shorttitle = {The Boost Graph Library},
  publisher = {{Addison-Wesley}},
  author = {Jeremy Siek and Lie-Quan Lee and Andrew Lumsdaine},
  year = {2002},
  keywords = {C++ (Computer program language)},
}
@Article{leskovec2016snap,
  title = {{{SNAP}}: {{A General}}-{{Purpose Network Analysis}} and {{Graph}}-{{Mining Library}}},
  volume = {8},
  number = {1},
  journal = {ACM Transactions on Intelligent Systems and Technology (TIST)},
  author = {Jure Leskovec and Rok Sosic},
  year = {2016},
  pages = {1},
  publisher = {{ACM}},
}
@Book{standard-cpp-foundation_international_2017,
  address = {Genf},
  edition = {5},
  title = {International {{Standard ISO}}/{{IEC}} 14882:2017({{E}}) \textendash{} {{Programming Language C}}++},
  publisher = {{International Organization for Standardization}},
  author = {{Standard CPP Foundation}},
  year = {2017},
}
@Article{haslett_simple_2008,
  title = {A Simple Monotone Process with Application to Radiocarbon-Dated Depth Chronologiesy},
  volume = {57},
  number = {4},
  journal = {Journal of the Royal Statistical Society: Series C (Applied Statistics)},
  author = {John Haslett and Andrew C Parnell},
  year = {2008},
  pages = {399-418},
  publisher = {{Wiley Online Library}},
}
@Article{reimer_intcal13_2013,
  title = {{{IntCal13}} and {{Marine13 Radiocarbon Age Calibration Curves}} 0\textendash{}50,000 {{Years}} Cal {{BP}}},
  volume = {55},
  issn = {0033-8222, 1945-5755},
  doi = {10.2458/azu_js_rc.55.16947},
  language = {en},
  number = {4},
  journal = {Radiocarbon},
  author = {Paula J. Reimer and Edouard Bard and Alex Bayliss and J. Warren Beck and Paul G. Blackwell and Christopher Bronk Ramsey and Caitlin E. Buck and Hai Cheng and R. Lawrence Edwards and Michael Friedrich and Pieter M. Grootes and Thomas P. Guilderson and Haflidi Haflidason and Irka Hajdas and Christine Hatt{\a'e} and Timothy J. Heaton and Dirk L. Hoffmann and Alan G. Hogg and Konrad A. Hughen and K. Felix Kaiser and Bernd Kromer and Sturt W. Manning and Mu Niu and Ron W. Reimer and David A. Richards and E. Marian Scott and John R. Southon and Richard A. Staff and Christian S. M. Turney and Johannes {van der Plicht}},
  year = {2013},
  pages = {1869-1887},
}
@TechReport{snyder_map_1987,
  address = {Washington},
  type = {{{USGS Numbered Series}}},
  title = {Map Projections: {{A}} Working Manual},
  shorttitle = {Map Projections},
  number = {1395},
  institution = {{U.S. Government Printing Office}},
  author = {John P. Snyder},
  year = {1987},
}
@Book{fox_r_2011,
  address = {Thousand Oaks},
  edition = {Second},
  title = {An {{R Companion}} to {{Applied Regression}}},
  publisher = {{Sage}},
  author = {John Fox and Sanford Weisberg},
  year = {2011},
}
@Book{wilke_cowplot_2018,
  title = {Cowplot: {{Streamlined Plot Theme}} and {{Plot Annotations}} for 'Ggplot2'},
  author = {Claus O. Wilke},
  year = {2018},
  note = {R package version 0.9.3},
}
@Book{wickham_forcats_2018,
  title = {Forcats: {{Tools}} for {{Working}} with {{Categorical Variables}} ({{Factors}})},
  author = {Hadley Wickham},
  year = {2018},
  note = {R package version 0.3.0},
}
@Book{wickham_ggplot2_2016,
  title = {Ggplot2: {{Elegant Graphics}} for {{Data Analysis}}},
  isbn = {978-3-319-24277-4},
  publisher = {{Springer-Verlag New York}},
  author = {Hadley Wickham},
  year = {2016},
}
@Book{auguie_gridextra_2017,
  title = {{{gridExtra}}: {{Miscellaneous Functions}} for {"}{{Grid}}{"} {{Graphics}}},
  author = {Baptiste Auguie},
  year = {2017},
  note = {R package version 2.3},
}
@Book{solymos_pbapply_2018,
  title = {Pbapply: {{Adding Progress Bar}} to '*apply' {{Functions}}},
  author = {Peter Solymos and Zygmunt Zawadzki},
  year = {2018},
  note = {R package version 1.3-4},
}
@Article{wickham_split-apply-combine_2011,
  title = {The {{Split}}-{{Apply}}-{{Combine Strategy}} for {{Data Analysis}}},
  volume = {40},
  number = {1},
  journal = {Journal of Statistical Software},
  author = {Hadley Wickham},
  year = {2011},
  pages = {1-29},
}
@Book{urbanek_png_2013,
  title = {Png: {{Read}} and Write {{PNG}} Images},
  author = {Simon Urbanek},
  year = {2013},
  note = {R package version 0.1-7},
}
@Book{wickham_pryr_2018,
  title = {Pryr: {{Tools}} for {{Computing}} on the {{Language}}},
  author = {Hadley Wickham},
  year = {2018},
  note = {R package version 0.1.4},
}
@Book{hijmans_raster_2017,
  title = {Raster: {{Geographic Data Analysis}} and {{Modeling}}},
  author = {Robert J. Hijmans},
  year = {2017},
  note = {R package version 2.6-7},
}
@Book{pebesma_sf_2018,
  title = {Sf: {{Simple Features}} for {{R}}},
  author = {Edzer Pebesma},
  year = {2018},
  note = {R package version 0.6-3},
}
@Book{oksanen_vegan_2018,
  title = {Vegan: {{Community Ecology Package}}},
  author = {Jari Oksanen and F. Guillaume Blanchet and Michael Friendly and Roeland Kindt and Pierre Legendre and Dan McGlinn and Peter R. Minchin and R. B. O'Hara and Gavin L. Simpson and Peter Solymos and M. Henry H. Stevens and Eduard Szoecs and Helene Wagner},
  year = {2018},
  note = {R package version 2.5-2},
}
@Book{schmid_c14bazaar_2018,
  title = {{{c14bazAAR}}: {{Download}} and {{Prepare C14 Dates}} from {{Different Source Databases}}},
  author = {Clemens Schmid and Dirk Seidensticker and Daniel Knitter and Martin Hinz and David Matzig and Wolfgang Hamer and Kay Schm{\"u}tz},
  year = {2018},
  note = {00000
R package version 1.0.0},
}
@Book{south_rnaturalearthdata_2017,
  title = {Rnaturalearthdata: {{World Vector Map Data}} from {{Natural Earth Used}} in 'Rnaturalearth'},
  author = {Andy South},
  year = {2017},
  note = {R package version 0.1.0},
}
@Book{south_rnaturalearth_2017,
  title = {Rnaturalearth: {{World Map Data}} from {{Natural Earth}}},
  author = {Andy South},
  year = {2017},
  note = {R package version 0.1.0},
}
@Book{schmid_popgenerator_2018,
  title = {Popgenerator: {{A}} Population Network Generator},
  author = {Clemens Schmid},
  year = {2018},
  note = {00000
R package version 1.0.0},
}
@Book{clemens_schmid_gluesless_2018,
  address = {Kiel},
  title = {Gluesless: {{An Idea Expansion Simulation}}},
  author = {Clemens Schmid},
  year = {2018},
  note = {00000},
}
@Book{goulet_expm_2017,
  title = {Expm: {{Matrix Exponential}}, {{Log}}, 'Etc'},
  author = {Vincent Goulet and Christophe Dutang and Martin Maechler and David Firth and Marina Shapira and Michael Stadelmann},
  year = {2017},
  note = {00005},
}
@Book{arnold_ggthemes_2018,
  title = {Ggthemes: {{Extra Themes}}, {{Scales}} and {{Geoms}} for 'Ggplot2'},
  author = {Jeffrey B. Arnold},
  year = {2018},
  note = {00031},
}
@Book{vaidyanathan_htmlwidgets_2018,
  title = {Htmlwidgets: {{HTML Widgets}} for {{R}}},
  author = {Ramnath Vaidyanathan and Yihui Xie and J. J. Allaire and Joe Cheng and Kenton Russell},
  year = {2018},
  note = {00018},
}
@Article{pebesma_classes_2005,
  title = {Classes and Methods for Spatial Data in {{R}}},
  volume = {5},
  number = {2},
  journal = {R News},
  author = {Edzer J. Pebesma and Roger S. Bivand},
  month = {nov},
  year = {2005},
  pages = {9--13},
  note = {00019},
}

@Book{bivand_applied_2013,
  title = {Applied Spatial Data Analysis with {{R}}, {{Second}} Edition},
  publisher = {{Springer, NY}},
  author = {Roger S. Bivand and Edzer Pebesma and Virgilio Gomez-Rubio},
  year = {2013},
  note = {00000},
}
@Article{csardi_igraph_2006,
  title = {The Igraph Software Package for Complex Network Research},
  volume = {Complex Systems},
  journal = {InterJournal},
  author = {Gabor Csardi and Tamas Nepusz},
  year = {2006},
  pages = {1695},
  note = {03777},
}
@Book{meschiari_latex2exp_2015,
  title = {Latex2exp: {{Use LaTeX Expressions}} in {{Plots}}},
  author = {Stefano Meschiari},
  year = {2015},
  note = {00000},
}
@Article{wickham_reshaping_2007,
  title = {Reshaping {{Data}} with the Reshape {{Package}}},
  volume = {21},
  number = {12},
  journal = {Journal of Statistical Software},
  author = {Hadley Wickham},
  year = {2007},
  pages = {1-20},
  note = {00787},
}
@Book{hattab_revealjs_2017,
  title = {Revealjs: {{R Markdown Format}} for 'reveal.Js' {{Presentations}}},
  author = {Hakim El Hattab and J. J. Allaire},
  year = {2017},
  note = {00000},
}
@Book{wickham_scales_2017,
  title = {Scales: {{Scale Functions}} for {{Visualization}}},
  author = {Hadley Wickham},
  year = {2017},
  note = {00040},
}
@Book{almende_visnetwork_2018,
  title = {{{visNetwork}}: {{Network Visualization}} Using 'vis.Js' {{Library}}},
  author = {B.V. Almende and Benoit Thieurmel and Titouan Robert},
  year = {2018},
  note = {00020},
}
@Book{chang_webshot_2018,
  title = {Webshot: {{Take Screenshots}} of {{Web Pages}}},
  author = {Winston Chang},
  year = {2018},
  note = {00002},
}