From 559c31c690ce2dd472aa23ef1f14a5fca5ee7d0b Mon Sep 17 00:00:00 2001
From: mirpedrol <mirp.julia@gmail.com>
Date: Thu, 21 Dec 2023 13:35:58 +0100
Subject: [PATCH 1/4] remove redundancy of installing docs

---
 docs/contributing/setup.md | 21 +++------------------
 1 file changed, 3 insertions(+), 18 deletions(-)

diff --git a/docs/contributing/setup.md b/docs/contributing/setup.md
index caca34b..3ef0934 100644
--- a/docs/contributing/setup.md
+++ b/docs/contributing/setup.md
@@ -13,23 +13,6 @@ To compile and run the tests use the following command:
 ./gradlew check
 ```
 
-## Launch without a local Nextflow build
-
-The plugin can be tested prior release without using a local Nextflow build using the following steps:
-
-1. Build the plugin: 
-
-```bash
-make buildPlugins
-```
-
-2. Copy `build/plugins/nf-co2footprint-<version>` to `$HOME/.nextflow/plugins`
-4. Run nextflow with this command:
-
-   ```bash
-   nextflow run -plugins nf-co2footprint@0.4.0 <script/pipeline name> [pipeline params]
-   ```
-
 ## Launch it with Nextflow
 
 To test with Nextflow for development purpose:
@@ -59,7 +42,9 @@ To test with Nextflow for development purpose:
    ./launch.sh run -plugins nf-co2footprint <script/pipeline name> [pipeline params]
    ```
 
-## Alternative: Compile and install to Nextflow plugins directory
+## Alternative: Launch without a local Nextflow build
+
+The plugin can be tested prior release without using a local Nextflow build using the following steps:
 
 !!! warning
 

From 4da8301b8961b730a346a8395b186992e17b9bd3 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?J=C3=BAlia=20Mir=20Pedrol?= <mirp.julia@gmail.com>
Date: Thu, 21 Dec 2023 13:51:31 +0100
Subject: [PATCH 2/4] Update docs/contributing/setup.md

Co-authored-by: Sabrina Krakau <sabrinakrakau@gmail.com>
---
 docs/contributing/setup.md | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/docs/contributing/setup.md b/docs/contributing/setup.md
index 3ef0934..28b71da 100644
--- a/docs/contributing/setup.md
+++ b/docs/contributing/setup.md
@@ -44,7 +44,7 @@ To test with Nextflow for development purpose:
 
 ## Alternative: Launch without a local Nextflow build
 
-The plugin can be tested prior release without using a local Nextflow build using the following steps:
+The plugin can be tested without using a local Nextflow build using the following steps:
 
 !!! warning
 

From 58a160d3d751d2cad7fffb7e465f41bc59ae1964 Mon Sep 17 00:00:00 2001
From: mirpedrol <mirp.julia@gmail.com>
Date: Thu, 21 Dec 2023 13:54:49 +0100
Subject: [PATCH 3/4] change version to 0.1.0 in the docs

---
 docs/contributing/setup.md | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/docs/contributing/setup.md b/docs/contributing/setup.md
index 28b71da..35a578e 100644
--- a/docs/contributing/setup.md
+++ b/docs/contributing/setup.md
@@ -61,7 +61,7 @@ The plugin can be tested without using a local Nextflow build using the followin
 2. Run nextflow with this command, specifying the plugin version:
 
    ```bash
-   nextflow run -plugins nf-co2footprint@0.4.0 <script/pipeline name> [pipeline params]
+   nextflow run -plugins nf-co2footprint@0.1.0 <script/pipeline name> [pipeline params]
    ```
 
 

From 0d71ffe9e5411150e4fe1e9e7e1450863c44b87c Mon Sep 17 00:00:00 2001
From: mirpedrol <mirp.julia@gmail.com>
Date: Thu, 21 Dec 2023 13:56:30 +0100
Subject: [PATCH 4/4] update compiling section from docs

---
 docs/contributing/setup.md | 17 +++++++++--------
 1 file changed, 9 insertions(+), 8 deletions(-)

diff --git a/docs/contributing/setup.md b/docs/contributing/setup.md
index 35a578e..bedabca 100644
--- a/docs/contributing/setup.md
+++ b/docs/contributing/setup.md
@@ -5,14 +5,6 @@ description: How to contribute to nf-co2footprint
 
 # Getting started with plugin development
 
-## Compiling
-
-To compile and run the tests use the following command:
-
-```bash
-./gradlew check
-```
-
 ## Launch it with Nextflow
 
 To test with Nextflow for development purpose:
@@ -65,6 +57,15 @@ The plugin can be tested without using a local Nextflow build using the followin
    ```
 
 
+## Compiling and running tests
+
+To compile and run the tests use the following command:
+
+```bash
+./gradlew check
+```
+
+
 ## Change and preview the docs
 
 The docs are generated using [Material for MkDocs](https://squidfunk.github.io/mkdocs-material/). To change the docs, edit the files in the [docs/](docs/) folder and run the following command to generate the docs (after installing mkdocs via `pip install mkdocs-material`):