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Nextflow processes with exec do not show up in the Legacy Renderer #29

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stevekm opened this issue Mar 19, 2024 · 2 comments
Open

Nextflow processes with exec do not show up in the Legacy Renderer #29

stevekm opened this issue Mar 19, 2024 · 2 comments

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@stevekm
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stevekm commented Mar 19, 2024

Just an observation, not sure if this is intentional or a known issue, but if you have a Nextflow process like this

process EXEC_FOO {
    input:
    tuple val(prefix), val(constant)

    output:
    path(outputfile)

    exec:
    println ">>> EXEC: ${prefix}, ${constant}"
    outputfile = new File("${task.workDir}/${prefix}.exec.txt")
    outputfile.write(constant)
}

it does not seem to show up in the legacy manifest JSON output

@bentsherman
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Does it appear in the BCO output?

@stevekm
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stevekm commented May 21, 2024

No it does not seem to appear in either. See the results from running the PR #31

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