From 6bf0d1841b4c2e77833e4c0291846894a7baaf6f Mon Sep 17 00:00:00 2001 From: Jennifer Chang Date: Fri, 23 Feb 2024 17:25:12 -0800 Subject: [PATCH] Switch to uncached dataset --- phylogenetic/rules/prepare_sequences.smk | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/phylogenetic/rules/prepare_sequences.smk b/phylogenetic/rules/prepare_sequences.smk index b0d05722..211c78ab 100644 --- a/phylogenetic/rules/prepare_sequences.smk +++ b/phylogenetic/rules/prepare_sequences.smk @@ -20,8 +20,8 @@ rule download: sequences = "data/sequences_{serotype}.fasta.zst", metadata = "data/metadata_{serotype}.tsv.zst" params: - sequences_url = "https://data.nextstrain.org/files/dengue/sequences_{serotype}.fasta.zst", - metadata_url = "https://data.nextstrain.org/files/dengue/metadata_{serotype}.tsv.zst" + sequences_url = "https://data.nextstrain.org/files/workflows/dengue/sequences_{serotype}.fasta.zst", + metadata_url = "https://data.nextstrain.org/files/workflows/dengue/metadata_{serotype}.tsv.zst" shell: """ curl -fsSL --compressed {params.sequences_url:q} --output {output.sequences}