Add missingDataAsZero argument to DEEPTOOLS_COMPUTEMATRIX configurati…

…on via ext.args
nf-core · Nov 21, 2022 · dc8eeeb · dc8eeeb
1 parent 100c71e
commit dc8eeeb
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/conf/modules.config b/conf/modules.config
@@ -484,7 +484,7 @@ if (!params.skip_preseq) {
 if (!params.skip_plot_profile) {
     process {
         withName: 'DEEPTOOLS_COMPUTEMATRIX' {
-            ext.args   = 'scale-regions --regionBodyLength 1000 --beforeRegionStartLength 3000 --afterRegionStartLength 3000 --skipZeros --smartLabels'
+            ext.args   = 'scale-regions --regionBodyLength 1000 --beforeRegionStartLength 3000 --afterRegionStartLength 3000 --missingDataAsZero --skipZeros --smartLabels'
             ext.prefix = { "${meta.id}.mLb.clN" }
             publishDir = [
                 path: { "${params.outdir}/${params.aligner}/merged_library/deeptools/plotprofile" },