You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Related to this issue #344, I frequently encounter the out-of-memory error during sorting bedgraph files when the file size is large. Can we use GNU sort instead of bedtools sort?
I noticed that you previously used GNU sort but later decided to switch to bedtools sort (#290). However, this issue can be simply solved by adding the following line export LC_COLLATE=C and the job can be done more quickly with less memory.
Is there a particular reason for switching to bedtools sort? If not, could we use GNU sort instead for quicker sort with less memory?
The text was updated successfully, but these errors were encountered:
Related to this issue #344, I frequently encounter the out-of-memory error during sorting bedgraph files when the file size is large. Can we use GNU sort instead of bedtools sort?
I noticed that you previously used GNU sort but later decided to switch to bedtools sort (#290). However, this issue can be simply solved by adding the following line
export LC_COLLATE=C
and the job can be done more quickly with less memory.Is there a particular reason for switching to bedtools sort? If not, could we use GNU sort instead for quicker sort with less memory?
The text was updated successfully, but these errors were encountered: