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Option to downsample before fastp #44

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antunderwood opened this issue Jun 19, 2021 · 0 comments
Open

Option to downsample before fastp #44

antunderwood opened this issue Jun 19, 2021 · 0 comments
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enhancement New feature or request

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@antunderwood
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In my most recent analysis, each of the fastq files for a sample was 8GB (yes I know) which led fastp to give up the ghost, I think because of memory but there wasn't an obvious error message. I'm not sure there's much we can do about this as we subsample after fastp. I guess it may be a pretty rare use case but I thought it worth mentioning

@antunderwood antunderwood added the enhancement New feature or request label Jun 19, 2021
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