From 54a8e8aa660155ed5d2461a64ec5d3e3de607db2 Mon Sep 17 00:00:00 2001
From: asp8200 <anders@mynucleus.com>
Date: Wed, 13 Mar 2024 15:20:49 +0000
Subject: [PATCH 1/3] Removing option stub from CI-test of download

---
 .github/workflows/download_pipeline.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/download_pipeline.yml b/.github/workflows/download_pipeline.yml
index 08622fd5..48fe5d0a 100644
--- a/.github/workflows/download_pipeline.yml
+++ b/.github/workflows/download_pipeline.yml
@@ -69,4 +69,4 @@ jobs:
         env:
           NXF_SINGULARITY_CACHEDIR: ./
           NXF_SINGULARITY_HOME_MOUNT: true
-        run: nextflow run ./${{ env.REPOTITLE_LOWERCASE }}/$( sed 's/\W/_/g' <<< ${{ env.REPO_BRANCH }}) -stub -profile test,singularity --outdir ./results
+        run: nextflow run ./${{ env.REPOTITLE_LOWERCASE }}/$( sed 's/\W/_/g' <<< ${{ env.REPO_BRANCH }}) -profile test,singularity --outdir ./results

From 98ce86823c44f091ca70782c91d95f15a8d5a3d0 Mon Sep 17 00:00:00 2001
From: asp8200 <anders@mynucleus.com>
Date: Wed, 13 Mar 2024 15:24:03 +0000
Subject: [PATCH 2/3] Updating changelog

---
 CHANGELOG.md | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/CHANGELOG.md b/CHANGELOG.md
index a1cf987e..ec75d4bf 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -3,13 +3,13 @@
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/)
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
-## v2.1.1 - Joy Buolamwini
+## dev
 
 ### `Added`
 
 - [#73](https://github.com/nf-core/bamtofastq/pull/73) Sync TEMPLATE with tools 2.12
 - [#75](https://github.com/nf-core/bamtofastq/pull/75), [#78](https://github.com/nf-core/bamtofastq/pull/78) Sync TEMPLATE with tools 2.13
-- [#80](https://github.com/nf-core/bamtofastq/pull/80) Sync TEMPLATE with tools 2.13.1
+- [#80](https://github.com/nf-core/bamtofastq/pull/80), [#84](https://github.com/nf-core/bamtofastq/pull/84) Sync TEMPLATE with tools 2.13.1
 
 ### `Changed`
 

From 795889b8f3557fb30f9ab3d1a4ada82ec63d2e8c Mon Sep 17 00:00:00 2001
From: asp8200 <anders@mynucleus.com>
Date: Wed, 13 Mar 2024 15:27:17 +0000
Subject: [PATCH 3/3] update changelog

---
 CHANGELOG.md | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/CHANGELOG.md b/CHANGELOG.md
index ec75d4bf..ed466343 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -3,7 +3,7 @@
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/)
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
-## dev
+## v2.1.1 - Joy Buolamwini
 
 ### `Added`