diff --git a/.github/CONTRIBUTING.md b/.github/CONTRIBUTING.md
index 49c279a..e49d88a 100644
--- a/.github/CONTRIBUTING.md
+++ b/.github/CONTRIBUTING.md
@@ -26,8 +26,11 @@ If you're not used to this workflow with git, you can start with some [docs from
 
 ## Tests
 
-You can optionally test your changes by running the pipeline locally. Then it is recommended to use the `debug` profile to
-receive warnings about process selectors and other debug info. Example: `nextflow run . -profile debug,test,docker --outdir <OUTDIR>`.
+You have the option to test your changes locally by running the pipeline. For receiving warnings about process selectors and other `debug` information, it is recommended to use the debug profile. Execute all the tests with the following command:
+
+```bash
+nf-test test --profile debug,test,docker --verbose
+```
 
 When you create a pull request with changes, [GitHub Actions](https://github.com/features/actions) will run automatic tests.
 Typically, pull-requests are only fully reviewed when these tests are passing, though of course we can help out before then.
diff --git a/.github/workflows/download_pipeline.yml b/.github/workflows/download_pipeline.yml
index 712ad3a..2d20d64 100644
--- a/.github/workflows/download_pipeline.yml
+++ b/.github/workflows/download_pipeline.yml
@@ -82,4 +82,5 @@ jobs:
         if: ${{ job.steps.stub_run_pipeline.status == failure() }}
         env:
           NXF_SINGULARITY_CACHEDIR: ./
-          NXF_SINGULARITY_HOME_MOUNT: true
\ No newline at end of file
+          NXF_SINGULARITY_HOME_MOUNT: true
+        run: nextflow run ./${{ env.REPOTITLE_LOWERCASE }}/$( sed 's/\W/_/g' <<< ${{ env.REPO_BRANCH }}) -profile test,singularity --outdir ./results
diff --git a/.github/workflows/linting.yml b/.github/workflows/linting.yml
index a3fb254..1fcafe8 100644
--- a/.github/workflows/linting.yml
+++ b/.github/workflows/linting.yml
@@ -20,7 +20,6 @@ jobs:
         uses: actions/setup-python@82c7e631bb3cdc910f68e0081d67478d79c6982d # v5
         with:
           python-version: "3.12"
-          cache: "pip"
 
       - name: Install pre-commit
         run: pip install pre-commit
diff --git a/.nf-core.yml b/.nf-core.yml
index 6468ef8..e0b85a7 100644
--- a/.nf-core.yml
+++ b/.nf-core.yml
@@ -1,5 +1,2 @@
 repository_type: pipeline
-nf_core_version: "2.14.0"
-lint:
-  files_unchanged:
-    - .github/CONTRIBUTING.md
\ No newline at end of file
+nf_core_version: "2.14.1"
diff --git a/CHANGELOG.md b/CHANGELOG.md
index 9b26570..dc0fb74 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -10,6 +10,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 ### `Changed`
 
 - [#90](https://github.com/nf-core/bamtofastq/pull/90) - Sync TEMPLATE with tools 2.14.0
+- [#91](https://github.com/nf-core/bamtofastq/pull/91) - Sync TEMPLATE with tools 2.14.1
 
 ### `Fixed`
 
diff --git a/README.md b/README.md
index b5e9c56..a6f7003 100644
--- a/README.md
+++ b/README.md
@@ -6,7 +6,7 @@
 </h1>
 
 [![GitHub Actions CI Status](https://github.com/nf-core/bamtofastq/actions/workflows/ci.yml/badge.svg)](https://github.com/nf-core/bamtofastq/actions/workflows/ci.yml)
-[![GitHub Actions Linting Status](https://github.com/nf-core/bamtofastq/actions/workflows/linting.yml/badge.svg)](https://github.com/nf-core/bamtofastq/actions/workflows/linting.yml)[![AWS CI](https://img.shields.io/badge/CI%20tests-full%20size-FF9900?labelColor=000000&logo=Amazon%20AWS)](https://nf-co.re/bamtofastq/results)[![Cite with Zenodo](http://img.shields.io/badge/DOI-10.5281/zenodo.XXXXXXX-1073c8?labelColor=000000)](https://doi.org/10.5281/zenodo.XXXXXXX)
+[![GitHub Actions Linting Status](https://github.com/nf-core/bamtofastq/actions/workflows/linting.yml/badge.svg)](https://github.com/nf-core/bamtofastq/actions/workflows/linting.yml)[![AWS CI](https://img.shields.io/badge/CI%20tests-full%20size-FF9900?labelColor=000000&logo=Amazon%20AWS)](https://nf-co.re/bamtofastq/results)[![Cite with Zenodo](http://img.shields.io/badge/DOI-10.5281/zenodo.4710628-1073c8?labelColor=000000)](https://doi.org/10.5281/zenodo.4710628)
 [![nf-test](https://img.shields.io/badge/unit_tests-nf--test-337ab7.svg)](https://www.nf-test.com)
 
 [![Nextflow](https://img.shields.io/badge/nextflow%20DSL2-%E2%89%A523.04.0-23aa62.svg)](https://www.nextflow.io/)
diff --git a/nextflow.config b/nextflow.config
index fd59ded..835e6e1 100644
--- a/nextflow.config
+++ b/nextflow.config
@@ -254,7 +254,7 @@ manifest {
     mainScript      = 'main.nf'
     nextflowVersion = '!>=23.04.0'
     version         = '2.1.2dev'
-    doi             = 'https://doi.org/10.5281/zenodo.4710628'
+    doi             = '10.5281/zenodo.4710628'
 }
 
 // Load modules.config for DSL2 module specific options