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nf-core/configs: GIGA Cluster Configuration

This configuration provides sensible default parameters to run nf-core pipelines (and nf-core compatible pipelines) on the GIGA cluster. To use it, add -profile giga when running a pipeline. This will automatically download the giga.config.

The configuration sets slurm as the default executor and enables singularity as container runner.

Loading the required modules

Before running a pipeline, one should load slurm, nextflow and singularity using the environment module system. This can be achieved with:

# Clear loaded modules
module purge

# Add GIGA bioinformatics modules to modules path
module use '/resources/GIGA/PUBLIC/tools/modules/containerised/modulefiles'
module use '/resources/GIGA/PUBLIC/tools/modules/uncontainerised/modulefiles'

# Load modules
module load 'slurm'
module load 'singularity/giga'
module load 'nextflow/24.04.4'

Built with ❤️ by the GIGA Bioinformatics Team