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modules.json
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modules.json
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{
"name": "nf-core/createpanelrefs",
"homePage": "https://github.com/nf-core/createpanelrefs",
"repos": {
"https://github.com/nf-core/modules.git": {
"modules": {
"nf-core": {
"cnvkit/batch": {
"branch": "master",
"git_sha": "f53b071421340e6fac0806c86ba030e578e94826",
"installed_by": ["modules"]
},
"gatk4/annotateintervals": {
"branch": "master",
"git_sha": "d742e3143f2ccb8853c29b35cfcf50b5e5026980",
"installed_by": ["modules"]
},
"gatk4/bedtointervallist": {
"branch": "master",
"git_sha": "d3f215802f696f7993f25c759781d2db91232015",
"installed_by": ["modules"]
},
"gatk4/collectreadcounts": {
"branch": "master",
"git_sha": "d742e3143f2ccb8853c29b35cfcf50b5e5026980",
"installed_by": ["modules"]
},
"gatk4/createreadcountpanelofnormals": {
"branch": "master",
"git_sha": "d742e3143f2ccb8853c29b35cfcf50b5e5026980",
"installed_by": ["modules"]
},
"gatk4/createsomaticpanelofnormals": {
"branch": "master",
"git_sha": "d742e3143f2ccb8853c29b35cfcf50b5e5026980",
"installed_by": ["bam_create_som_pon_gatk"]
},
"gatk4/determinegermlinecontigploidy": {
"branch": "master",
"git_sha": "60a7dbae179bcfa24c10294cc9a07423a239c19a",
"installed_by": ["modules"]
},
"gatk4/filterintervals": {
"branch": "master",
"git_sha": "d742e3143f2ccb8853c29b35cfcf50b5e5026980",
"installed_by": ["modules"]
},
"gatk4/genomicsdbimport": {
"branch": "master",
"git_sha": "5caf7640a9ef1d18d765d55339be751bb0969dfa",
"installed_by": ["bam_create_som_pon_gatk"]
},
"gatk4/germlinecnvcaller": {
"branch": "master",
"git_sha": "cf607b7749da0a8f5ca2a1e31233e13e3159e2fe",
"installed_by": ["modules"]
},
"gatk4/indexfeaturefile": {
"branch": "master",
"git_sha": "108e1f5bafc045ac19890852a41e8d95ae12aa67",
"installed_by": ["modules"]
},
"gatk4/intervallisttools": {
"branch": "master",
"git_sha": "afb604624abcc2fc67a43d70a2de369a50d16105",
"installed_by": ["modules"]
},
"gatk4/mutect2": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["bam_create_som_pon_gatk"]
},
"gatk4/preprocessintervals": {
"branch": "master",
"git_sha": "d742e3143f2ccb8853c29b35cfcf50b5e5026980",
"installed_by": ["modules"]
},
"multiqc": {
"branch": "master",
"git_sha": "cf17ca47590cc578dfb47db1c2a44ef86f89976d",
"installed_by": ["modules"]
},
"picard/createsequencedictionary": {
"branch": "master",
"git_sha": "20b0918591d4ba20047d7e13e5094bcceba81447",
"installed_by": ["modules"]
},
"samtools/faidx": {
"branch": "master",
"git_sha": "04fbbc7c43cebc0b95d5b126f6d9fe4effa33519",
"installed_by": ["modules"]
},
"samtools/index": {
"branch": "master",
"git_sha": "04fbbc7c43cebc0b95d5b126f6d9fe4effa33519",
"installed_by": ["modules"]
}
}
},
"subworkflows": {
"nf-core": {
"bam_create_som_pon_gatk": {
"branch": "master",
"git_sha": "b0783b07beb65cac505fa6202e8f670437637b45",
"installed_by": ["subworkflows"]
},
"utils_nextflow_pipeline": {
"branch": "master",
"git_sha": "3aa0aec1d52d492fe241919f0c6100ebf0074082",
"installed_by": ["subworkflows"]
},
"utils_nfcore_pipeline": {
"branch": "master",
"git_sha": "1b6b9a3338d011367137808b49b923515080e3ba",
"installed_by": ["subworkflows"]
},
"utils_nfschema_plugin": {
"branch": "master",
"git_sha": "bbd5a41f4535a8defafe6080e00ea74c45f4f96c",
"installed_by": ["subworkflows"]
}
}
}
}
}
}