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error with import imp #213

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fanying2015 opened this issue Oct 17, 2023 · 1 comment
Closed

error with import imp #213

fanying2015 opened this issue Oct 17, 2023 · 1 comment
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@fanying2015
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fanying2015 commented Oct 17, 2023 •
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Description of the bug

Hello I'm trying to run the test for cutandrun pipeline with the script: nextflow run nf-core/cutandrun -profile test,conda --. The pipeline was working initially but stopped in the middle with the error message as shown. The pipeline was updated to the latested. Any suggestions how to solve it. Additional installation of imp in the env doesn't work. Thank you

Command used and terminal output

nextflow run nf-core/cutandrun -profile test,conda --out_dir

Relevant files

log_file.txt

System information

Nextflow version: version 23.10.0 build 5889
nf-core/cutandrun: '3.2'
Hardware: HPC
Executor: local
Container engine: conda
@fanying2015 fanying2015 added the bug Something isn't working label Oct 17, 2023
@chris-cheshire
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Hi, the pipeline does not support conda I am afraid. Please try running with a container engine like docker or singularity.

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@chris-cheshire @fanying2015