From 41d20ce0ab03445fa95390bc46f9b5fee6c14c91 Mon Sep 17 00:00:00 2001 From: Austin Hepperla Date: Fri, 12 Apr 2024 12:58:33 -0400 Subject: [PATCH 1/2] Update nextflow.config to load custom pipeline configs --- nextflow.config | 12 ++++++------ 1 file changed, 6 insertions(+), 6 deletions(-) diff --git a/nextflow.config b/nextflow.config index 7dbf472b..933c8fd6 100644 --- a/nextflow.config +++ b/nextflow.config @@ -165,12 +165,12 @@ try { System.err.println("WARNING: Could not load nf-core/config profiles: ${params.custom_config_base}/nfcore_custom.config") } -// // Load nf-core/cutandrun custom config -// try { -// includeConfig "${params.custom_config_base}/pipeline/cutandrun.config" -// } catch (Exception e) { -// System.err.println("WARNING: Could not load nf-core/config/cutandrun profiles: ${params.custom_config_base}/pipeline/cutandrun.config") -// } +// Load nf-core/cutandrun custom config +try { + includeConfig "${params.custom_config_base}/pipeline/cutandrun.config" +} catch (Exception e) { + System.err.println("WARNING: Could not load nf-core/config/cutandrun profiles: ${params.custom_config_base}/pipeline/cutandrun.config") +} profiles { debug { From 084f5fd859b1678b0453c16a7e5543609bbbaa76 Mon Sep 17 00:00:00 2001 From: Austin Hepperla Date: Fri, 12 Apr 2024 13:57:17 -0400 Subject: [PATCH 2/2] Update nextflow.config updated to dev branch