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Add samplesheet generation for taxprofiler #39
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Note: The default log -profile test | taxprofiler
detaxizer log -profile test_blastn | taxprofiler
*Edit, adding logs & different profiles |
Linting with tools 2.14.1 results in 0 errors. $ nf-core lint
INFO Testing pipeline: .
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✅ It runs with no erros when the input sheet is
detaxizer:
taxprofiler:
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// | ||
// Subworkflow with functionality specific to the nf-core/createtaxdb pipeline | ||
// | ||
workflow GENERATE_DOWNSTREAM_SAMPLESHEETS { |
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Should be made a sub workflow specifically for taxprofiler, as done in https://github.com/nf-core/mag/pull/688/files
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// Constructs the header string and then the strings of each row, and | ||
// finally concatenates for saving. | ||
ch_colnames |
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Try & make a function out of it
#38
PR checklist
nf-core lint
).nextflow run . -profile debug,test,docker --outdir <OUTDIR>
).docs/usage.md
is updated.docs/output.md
is updated.CHANGELOG.md
is updated.README.md
is updated (including new tool citations and authors/contributors).