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Issues list

Implement MHC binding subworkflow
#260 opened Jan 24, 2025 by jonasscheid • Draft
11 tasks
2
Add mhcnuggets module and harmonize prediction outputs
#259 opened Jan 24, 2025 by jonasscheid Loading…
11 tasks
2
Peptides are sometimes removed in the output when an unmodified sequence in present in the input bug Something isn't working
#258 opened Jan 23, 2025 by steffenlem
Important! Template update for nf-core/tools v3.1.2
#257 opened Jan 20, 2025 by nf-core-bot Loading…
Merge template 3.1.1
#256 opened Jan 16, 2025 by jonasscheid Loading…
1 of 11 tasks
1
BioMart request declined enhancement New feature or request
#248 opened Dec 4, 2024 by zhenzuo2
5
variant details not shown in epitope prediction result tsv when using VEP as annotation tool bug Something isn't working
#240 opened Apr 23, 2024 by qbicStefanC
2
Add syfpeithi module enhancement New feature or request
#217 opened Oct 29, 2023 by jonasscheid
Add netmhc(ii)pan module enhancement New feature or request
#216 opened Oct 29, 2023 by jonasscheid
Add mhcflurry module enhancement New feature or request
#215 opened Oct 29, 2023 by jonasscheid
Add mhcnuggets module enhancement New feature or request
#214 opened Oct 29, 2023 by jonasscheid
Rewrite and move check_requested_models in input_check subworkflow enhancement New feature or request question Further information is requested
#207 opened Aug 15, 2023 by jonasscheid
Update general structure of MHCbinding subworkflow enhancement New feature or request
#205 opened Aug 15, 2023 by alina-bauer
Proteome CLI flags of epaa and nextflow differ bug Something isn't working
#201 opened May 31, 2023 by jonasscheid
2
Use nf-core modules enhancement New feature or request
#193 opened Feb 28, 2023 by ggabernet
2 tasks
Add Manta support for structural variant prediction enhancement New feature or request
#181 opened Oct 18, 2022 by jonasscheid
@jonasscheid
2
Add rnaseq input do not merge
#174 opened Aug 25, 2022 by christopher-mohr Loading…
3 of 10 tasks
2.2.0
13
Add RNAseq table as input enhancement New feature or request
#134 opened Feb 7, 2022 by ggabernet 2.2.0
1
nfcore module: csvtk_concat or cat (mergeResults)
#97 opened Oct 27, 2021 by marissaDubbelaar 2.2.0
Enable selection of Ensembl (BioMart) version enhancement New feature or request
#75 opened Feb 11, 2021 by christopher-mohr 2.2.0
Add percentile rank scores enhancement New feature or request
#54 opened Sep 8, 2020 by skrakau 2.2.0
2
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