diff --git a/modules/local/parseoutputs/main.nf b/modules/local/parseoutputs/main.nf index 92d4ce4..5de9f7b 100644 --- a/modules/local/parseoutputs/main.nf +++ b/modules/local/parseoutputs/main.nf @@ -4,8 +4,8 @@ process PARSEOUTPUTS { conda "bioconda::samtools=1.17" container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? - 'https://depot.galaxyproject.org/singularity/samtools:1.15.1--h1170115_0' : - 'quay.io/biocontainers/samtools:1.15.1--h1170115_0' }" + 'https://depot.galaxyproject.org/singularity/samtools:1.17--h00cdaf9_0' : + 'biocontainers/samtools:1.17--h00cdaf9_0' }" input: tuple val(meta), path(bam) diff --git a/modules/local/samtools/fastqlocal/main.nf b/modules/local/samtools/fastqlocal/main.nf index 77e0f80..e94ecc8 100644 --- a/modules/local/samtools/fastqlocal/main.nf +++ b/modules/local/samtools/fastqlocal/main.nf @@ -4,8 +4,8 @@ process SAMTOOLS_FASTQ { conda "bioconda::samtools=1.17" container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? - 'https://depot.galaxyproject.org/singularity/samtools:1.15.1--h1170115_0' : - 'quay.io/biocontainers/samtools:1.15.1--h1170115_0' }" + 'https://depot.galaxyproject.org/singularity/samtools:1.17--h00cdaf9_0' : + 'biocontainers/samtools:1.17--h00cdaf9_0' }" input: tuple val(meta), path(bam) diff --git a/modules/local/samtools/viewsingle/main.nf b/modules/local/samtools/viewsingle/main.nf index 77f0ec4..c1b65ff 100644 --- a/modules/local/samtools/viewsingle/main.nf +++ b/modules/local/samtools/viewsingle/main.nf @@ -4,8 +4,8 @@ process SAMTOOLS_VIEW_SINGLE { conda "bioconda::samtools=1.17" container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? - 'https://depot.galaxyproject.org/singularity/samtools:1.15.1--h1170115_0' : - 'quay.io/biocontainers/samtools:1.15.1--h1170115_0' }" + 'https://depot.galaxyproject.org/singularity/samtools:1.17--h00cdaf9_0' : + 'biocontainers/samtools:1.17--h00cdaf9_0' }" input: tuple val(meta), path(input), path(index) diff --git a/nextflow.config b/nextflow.config index 6144ce2..64c3e9c 100644 --- a/nextflow.config +++ b/nextflow.config @@ -237,7 +237,7 @@ manifest { description = """A pipeline to investigate horizontal gene transfer from NGS data""" mainScript = 'main.nf' nextflowVersion = '!>=22.10.1' - version = '1.1.0' + version = '1.1.0' doi = '' }