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Issues starting the lncpipe #44

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rajp081105 opened this issue Jul 16, 2024 · 0 comments
Open

Issues starting the lncpipe #44

rajp081105 opened this issue Jul 16, 2024 · 0 comments

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@rajp081105
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This is the issue I am recieving

Jul-16 16:15:27.577 [Actor Thread 3] DEBUG nextflow.Nextflow - Ignoring exit because execution is already aborted -- message=HISAT2 index not found: /scratch/groups/ashbym/raj/lncRNA/grch38_snp_tran/genome_snp_tran
Jul-16 16:15:27.577 [Actor Thread 5] DEBUG nextflow.Nextflow - Ignoring exit because execution is already aborted -- message=Cannot find any reads matching: /scratch/groups/ashbym/raj/lncRNA/01.RawData/IMR_Con_1/IMR_Con_1_CKDL230021844-1A_HGL7JDSX7_L1_{1,2}.fq.gz
Plz check your fasta string in nextflow.config file. My config file has the appropriate paths and all dependencies are installed so can someone explain why this is occurring.

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