From b72d716416f2c37499c708f2f9f4d1e415e0dfd5 Mon Sep 17 00:00:00 2001
From: Martin Proks <martin.proks@sund.ku.dk>
Date: Sat, 30 Nov 2024 17:52:16 +0100
Subject: [PATCH] fix: small and full AWS test

---
 .github/workflows/awsfulltest.yml | 23 -----------------------
 .github/workflows/awstest.yml     | 23 +----------------------
 2 files changed, 1 insertion(+), 45 deletions(-)

diff --git a/.github/workflows/awsfulltest.yml b/.github/workflows/awsfulltest.yml
index 8329838..ef78836 100644
--- a/.github/workflows/awsfulltest.yml
+++ b/.github/workflows/awsfulltest.yml
@@ -42,31 +42,8 @@ jobs:
             {
               "hook_url": "${{ secrets.MEGATESTS_ALERTS_SLACK_HOOK_URL }}",
               "outdir": "s3://${{ secrets.AWS_S3_BUCKET }}/marsseq/results-${{ github.sha }}",
-              "build_references": true,
-              "velocity": true
             }
           profiles: test_full,aws_tower
-      - uses: actions/upload-artifact@v3
-        with:
-          name: Tower debug log file
-          path: tower_action_*.log
-
-      - name: Launch execution workflow via tower
-        uses: seqeralabs/action-tower-launch@v2
-        with:
-          workspace_id: ${{ secrets.TOWER_WORKSPACE_ID }}
-          access_token: ${{ secrets.TOWER_ACCESS_TOKEN }}
-          compute_env: ${{ secrets.TOWER_COMPUTE_ENV }}
-          revision: ${{ github.sha }}
-          workdir: s3://${{ secrets.AWS_S3_BUCKET }}/work/marsseq/work-${{ github.sha }}
-          parameters: |
-            {
-              "hook_url": "${{ secrets.MEGATESTS_ALERTS_SLACK_HOOK_URL }}",
-              "genomes_base": "s3://${{ secrets.AWS_S3_BUCKET }}/marsseq/results-${{ github.sha }}/references",
-              "outdir": "s3://${{ secrets.AWS_S3_BUCKET }}/marsseq/results-${{ github.sha }}",
-              "velocity": true
-            }
-          profiles: test_full
 
       - uses: actions/upload-artifact@v4
         with:
diff --git a/.github/workflows/awstest.yml b/.github/workflows/awstest.yml
index 2d01bcd..7faa06f 100644
--- a/.github/workflows/awstest.yml
+++ b/.github/workflows/awstest.yml
@@ -22,30 +22,9 @@ jobs:
           parameters: |
             {
               "outdir": "s3://${{ secrets.AWS_S3_BUCKET }}/marsseq/results-test-${{ github.sha }}",
-              "build_references": true,
-              "velocity": true
-            }
-          profiles: test,aws_tower
-      - uses: actions/upload-artifact@v3
-        with:
-          name: Tower debug log file
-          path: tower_action_*.log
-
-      - name: Launch execution workflow via tower
-        uses: seqeralabs/action-tower-launch@v2
-        with:
-          workspace_id: ${{ secrets.TOWER_WORKSPACE_ID }}
-          access_token: ${{ secrets.TOWER_ACCESS_TOKEN }}
-          compute_env: ${{ secrets.TOWER_COMPUTE_ENV }}
-          workdir: s3://${{ secrets.AWS_S3_BUCKET }}/work/marsseq/work-${{ github.sha }}
-          parameters: |
-            {
-              "genomes_base": "s3://${{ secrets.AWS_S3_BUCKET }}/marsseq/results-test-${{ github.sha }}/references",
-              "outdir": "s3://${{ secrets.AWS_S3_BUCKET }}/marsseq/results-test-${{ github.sha }}",
-              "velocity": true
             }
           profiles: test
-
+ 
       - uses: actions/upload-artifact@v4
         with:
           name: Seqera Platform debug log file