From 047c8d8ab55539dd7dcab54812cd757c967bf3ac Mon Sep 17 00:00:00 2001
From: steffenlem <steffen_lemke@live.de>
Date: Fri, 18 Aug 2023 12:04:01 +0200
Subject: [PATCH] Fixed parameter calling in psmfeatureextractor

---
 modules/local/openms_psmfeatureextractor.nf | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/modules/local/openms_psmfeatureextractor.nf b/modules/local/openms_psmfeatureextractor.nf
index d0a2b662..e11c914b 100644
--- a/modules/local/openms_psmfeatureextractor.nf
+++ b/modules/local/openms_psmfeatureextractor.nf
@@ -25,13 +25,13 @@ process OPENMS_PSMFEATUREEXTRACTOR {
             extra_features = "-extra"
         }
         if(params.use_deeplc){
-            if(params.add_abs_rt_error){
+            if(params.deeplc_add_abs_rt_error){
                 extra_features = "${extra_features} deeplc_abs_error"
             }
-            if(params.add_log_rt_error){
+            if(params.deeplc_add_log_rt_error){
                 extra_features = "${extra_features} deeplc_log_error"
             }
-            if(params.add_sqr_rt_error || (!params.add_sqr_rt_error && !params.add_abs_rt_error && !params.add_log_rt_error)){
+            if(params.deeplc_add_sqr_rt_error || (!params.deeplc_add_sqr_rt_error && !params.deeplc_add_abs_rt_error && !params.deeplc_add_log_rt_error)){
                 extra_features = "${extra_features} deeplc_sqr_error"
             }
         }