diff --git a/assets/multiqc_config.yml b/assets/multiqc_config.yml
index 5d8e4954..619d853b 100644
--- a/assets/multiqc_config.yml
+++ b/assets/multiqc_config.yml
@@ -3,9 +3,9 @@ custom_logo_url: https://github.com/nf-core/mhcquant
custom_logo_title: "nf-core/mhcquant"
report_comment: >
- This report has been generated by the nf-core/mhcquant
+ This report has been generated by the nf-core/mhcquant
analysis pipeline. For information about how to interpret these results, please see the
- documentation.
+ documentation.
report_section_order:
"nf-core-mhcquant-methods-description":
order: -1000
diff --git a/docs/output.md b/docs/output.md
index f39d180f..58d69c37 100644
--- a/docs/output.md
+++ b/docs/output.md
@@ -26,7 +26,7 @@ By default (only identification) the `best_search_engine_score[1]` holds the per
The TSV output file is an alternative output of [OpenMS](https://www.openms.de/) comprising similar information to the mzTab output. The TSV output of identification runs is a simple tab-delimited file holding information about FDR-filtered peptides and currently all values produced by `MSĀ²Rescore`. The TSV file in quantification mode (by using `--quantify`) is more complex and described in more detail below
-TSV Quant
TSV Quant
MAP contains information about the different mzML files that were provided initially
diff --git a/docs/usage.md b/docs/usage.md
index 89181c81..a9a839f3 100644
--- a/docs/usage.md
+++ b/docs/usage.md
@@ -77,9 +77,9 @@ nextflow run nf-core/mhcquant \
--input 'samplesheet.tsv' \
--outdir \
--fasta 'SWISSPROT_2020.fasta' \
- \
+ \
--peptide_min_length 8 \
---peptide_max_length 14 \
+ --peptide_max_length 14 \
--ms2pip_model 'Immuno-HCD' \
-profile docker
```