From 7bcd97378c1d2b3c2013ccb7d24829ac43717b61 Mon Sep 17 00:00:00 2001 From: jonasscheid Date: Thu, 21 Sep 2023 20:40:12 +0000 Subject: [PATCH] fix ionannotator input for mzml files --- workflows/mhcquant.nf | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/workflows/mhcquant.nf b/workflows/mhcquant.nf index 177fff3b..22739ddf 100644 --- a/workflows/mhcquant.nf +++ b/workflows/mhcquant.nf @@ -185,7 +185,7 @@ workflow MHCQUANT { ch_decoy_db = ch_fasta_file } - ch_ms_files = (branched_ms_files.mzml) + ch_ms_files = branched_ms_files.mzml.map{ meta, mzml -> [meta, mzml[0]]} // Raw file conversion THERMORAWFILEPARSER(branched_ms_files.raw) ch_versions = ch_versions.mix(THERMORAWFILEPARSER.out.versions.ifEmpty(null))