diff --git a/modules/nf-core/gmmdemux/main.nf b/modules/nf-core/gmmdemux/main.nf index 3cee7e8512c..d068085f249 100644 --- a/modules/nf-core/gmmdemux/main.nf +++ b/modules/nf-core/gmmdemux/main.nf @@ -46,7 +46,8 @@ process GMMDEMUX { $skip \\ $examine_cells \\ $hto_matrix \\ - $hto_names + $hto_names \\ + -o . cat <<-END_VERSIONS > versions.yml "${task.process}": GMM-Demux: $VERSION diff --git a/modules/nf-core/gmmdemux/tests/nextflow.config b/modules/nf-core/gmmdemux/tests/nextflow.config index 0d6b32c3d6f..66649e7ed07 100644 --- a/modules/nf-core/gmmdemux/tests/nextflow.config +++ b/modules/nf-core/gmmdemux/tests/nextflow.config @@ -11,6 +11,6 @@ params{ process { withName: GMMDEMUX { - ext.args = "-t ${params.threshold} -o . --summary ${params.num_cells} -a ${params.ambiguous} " + ext.args = "-t ${params.threshold} --summary ${params.num_cells} -a ${params.ambiguous} " } }