From 164498a3e042d4dd048ee774b7201fb0ecf9d464 Mon Sep 17 00:00:00 2001 From: adamrtalbot <12817534+adamrtalbot@users.noreply.github.com> Date: Mon, 30 Sep 2024 19:34:53 +0100 Subject: [PATCH] Add samtools sort and unzip to stress test --- modules/nf-core/samtools/sort/tests/main.nf.test | 3 ++- modules/nf-core/unzip/tests/main.nf.test | 5 +++-- 2 files changed, 5 insertions(+), 3 deletions(-) diff --git a/modules/nf-core/samtools/sort/tests/main.nf.test b/modules/nf-core/samtools/sort/tests/main.nf.test index c2ea9c72ac1..0bc6c835842 100644 --- a/modules/nf-core/samtools/sort/tests/main.nf.test +++ b/modules/nf-core/samtools/sort/tests/main.nf.test @@ -15,6 +15,7 @@ nextflow_process { when { process { """ + // testy mctestface input[0] = Channel.of([ [ id:'test', single_end:false ], // meta map file(params.modules_testdata_base_path + 'genomics/sarscov2/illumina/bam/test.paired_end.bam', checkIfExists: true) @@ -125,4 +126,4 @@ nextflow_process { ) } } -} +} \ No newline at end of file diff --git a/modules/nf-core/unzip/tests/main.nf.test b/modules/nf-core/unzip/tests/main.nf.test index 238b68d8ba5..df4cb5a6902 100644 --- a/modules/nf-core/unzip/tests/main.nf.test +++ b/modules/nf-core/unzip/tests/main.nf.test @@ -13,6 +13,7 @@ nextflow_process { when { process { """ + // testy mctestface input[0] = [ [ id: 'hello' ], file(params.modules_testdata_base_path + 'generic/tar/hello.tar.gz', checkIfExists: true) @@ -25,7 +26,7 @@ nextflow_process { assertAll( { assert process.success }, { assert snapshot(process.out).match() } - ) + ) } } @@ -51,4 +52,4 @@ nextflow_process { ) } } -} +} \ No newline at end of file