From 67e5d218c4e4fc99b5f6fe2981afebd8a9d2b119 Mon Sep 17 00:00:00 2001
From: mazzalab <t.mazza@operapadrepio.it>
Date: Thu, 19 Dec 2024 15:06:22 +0100
Subject: [PATCH] updated biocontainers and singularity links

---
 modules/nf-core/gzrt/main.nf                 |  4 +-
 modules/nf-core/gzrt/tests/main.nf.test.snap | 72 ++++++++++++++++++++
 2 files changed, 74 insertions(+), 2 deletions(-)
 create mode 100644 modules/nf-core/gzrt/tests/main.nf.test.snap

diff --git a/modules/nf-core/gzrt/main.nf b/modules/nf-core/gzrt/main.nf
index f0b7d49de06..2e9a8570fda 100644
--- a/modules/nf-core/gzrt/main.nf
+++ b/modules/nf-core/gzrt/main.nf
@@ -4,8 +4,8 @@ process GZRT {
 
     conda "${moduleDir}/environment.yml"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'https://depot.galaxyproject.org/singularity/gzrt:0.9.1--h577a1d6_0':
-        'biocontainers/gzrt:0.9.1--h577a1d6_0' }"
+        'https://depot.galaxyproject.org/singularity/gzrt:0.9.1--h577a1d6_1':
+        'biocontainers/gzrt:0.9.1--h577a1d6_1' }"
 
     input:
     tuple val(meta), path(fastqgz)
diff --git a/modules/nf-core/gzrt/tests/main.nf.test.snap b/modules/nf-core/gzrt/tests/main.nf.test.snap
new file mode 100644
index 00000000000..0fd316d3cb7
--- /dev/null
+++ b/modules/nf-core/gzrt/tests/main.nf.test.snap
@@ -0,0 +1,72 @@
+{
+    "Run gzrt on 30 paired-end reads - fastq.gz": {
+        "content": [
+            {
+                "0": [
+                    [
+                        {
+                            "id": "test",
+                            "single_end": false
+                        },
+                        "test_recovered.fastq.gz:md5,d41d8cd98f00b204e9800998ecf8427e"
+                    ]
+                ],
+                "1": [
+                    "versions.yml:md5,6d1e28b8a8043e3cba67606c7acdc676"
+                ],
+                "recovered": [
+                    [
+                        {
+                            "id": "test",
+                            "single_end": false
+                        },
+                        "test_recovered.fastq.gz:md5,d41d8cd98f00b204e9800998ecf8427e"
+                    ]
+                ],
+                "versions": [
+                    "versions.yml:md5,6d1e28b8a8043e3cba67606c7acdc676"
+                ]
+            }
+        ],
+        "meta": {
+            "nf-test": "0.9.2",
+            "nextflow": "24.10.2"
+        },
+        "timestamp": "2024-12-19T14:51:44.784873442"
+    },
+    "Run gzrt on 30 paired-end reads - fastq.gz - stub": {
+        "content": [
+            {
+                "0": [
+                    [
+                        {
+                            "id": "test",
+                            "single_end": false
+                        },
+                        "test_recovered.fastq.gz:md5,68b329da9893e34099c7d8ad5cb9c940"
+                    ]
+                ],
+                "1": [
+                    "versions.yml:md5,6d1e28b8a8043e3cba67606c7acdc676"
+                ],
+                "recovered": [
+                    [
+                        {
+                            "id": "test",
+                            "single_end": false
+                        },
+                        "test_recovered.fastq.gz:md5,68b329da9893e34099c7d8ad5cb9c940"
+                    ]
+                ],
+                "versions": [
+                    "versions.yml:md5,6d1e28b8a8043e3cba67606c7acdc676"
+                ]
+            }
+        ],
+        "meta": {
+            "nf-test": "0.9.2",
+            "nextflow": "24.10.2"
+        },
+        "timestamp": "2024-12-19T14:51:58.732374062"
+    }
+}
\ No newline at end of file