diff --git a/modules/nf-core/ucsc/bigwigaverageoverbed/tests/main.nf.test b/modules/nf-core/ucsc/bigwigaverageoverbed/tests/main.nf.test
new file mode 100644
index 00000000000..927641103d1
--- /dev/null
+++ b/modules/nf-core/ucsc/bigwigaverageoverbed/tests/main.nf.test
@@ -0,0 +1,36 @@
+
+nextflow_process {
+
+    name "Test Process UCSC_BIGWIGAVERAGEOVERBED"
+    script "../main.nf"
+    process "UCSC_BIGWIGAVERAGEOVERBED"
+
+    tag "modules"
+    tag "modules_nfcore"
+    tag "ucsc"
+    tag "ucsc/bigwigaverageoverbed"
+
+    test("sarscov2-bed-bigwig") {
+
+        when {
+            process {
+                """
+                input[0] = [
+				    [ id: 'test' ], // meta map
+				    [ file(params.modules_testdata_base_path + 'genomics/sarscov2/genome/bed/test.bed', checkIfExists: true) ]
+				]
+				input[1] = file(params.modules_testdata_base_path + 'genomics/sarscov2/illumina/bigwig/test.bigwig', checkIfExists: true)
+
+                """
+            }
+        }
+
+        then {
+            assertAll(
+                { assert process.success },
+                { assert snapshot(process.out).match() }
+            )
+        }
+    }
+
+}
diff --git a/modules/nf-core/ucsc/bigwigaverageoverbed/tests/main.nf.test.snap b/modules/nf-core/ucsc/bigwigaverageoverbed/tests/main.nf.test.snap
new file mode 100644
index 00000000000..ea8e73d01ac
--- /dev/null
+++ b/modules/nf-core/ucsc/bigwigaverageoverbed/tests/main.nf.test.snap
@@ -0,0 +1,35 @@
+{
+    "test-ucsc-bigwigaverageoverbed": {
+        "content": [
+            {
+                "0": [
+                    [
+                        {
+                            "id": "test"
+                        },
+                        "test.tab:md5,d92334d90353577571eaf777933dce9b"
+                    ]
+                ],
+                "1": [
+                    "versions.yml:md5,6cd96f62eb8229c893477ae2fefc9a73"
+                ],
+                "tab": [
+                    [
+                        {
+                            "id": "test"
+                        },
+                        "test.tab:md5,d92334d90353577571eaf777933dce9b"
+                    ]
+                ],
+                "versions": [
+                    "versions.yml:md5,6cd96f62eb8229c893477ae2fefc9a73"
+                ]
+            }
+        ],
+        "meta": {
+            "nf-test": "0.8.4",
+            "nextflow": "24.04.4"
+        },
+        "timestamp": "2024-08-23T08:58:18.917224"
+    }
+}
\ No newline at end of file
diff --git a/tests/config/pytest_modules.yml b/tests/config/pytest_modules.yml
index 81683a4a8f1..102b215f7ee 100644
--- a/tests/config/pytest_modules.yml
+++ b/tests/config/pytest_modules.yml
@@ -1560,9 +1560,6 @@ truvari/bench:
 ucsc/bedtobigbed:
   - modules/nf-core/ucsc/bedtobigbed/**
   - tests/modules/nf-core/ucsc/bedtobigbed/**
-ucsc/bigwigaverageoverbed:
-  - modules/nf-core/ucsc/bigwigaverageoverbed/**
-  - tests/modules/nf-core/ucsc/bigwigaverageoverbed/**
 ucsc/gtftogenepred:
   - modules/nf-core/ucsc/gtftogenepred/**
   - tests/modules/nf-core/ucsc/gtftogenepred/**
diff --git a/tests/modules/nf-core/ucsc/bigwigaverageoverbed/main.nf b/tests/modules/nf-core/ucsc/bigwigaverageoverbed/main.nf
deleted file mode 100644
index 771bf066e8e..00000000000
--- a/tests/modules/nf-core/ucsc/bigwigaverageoverbed/main.nf
+++ /dev/null
@@ -1,15 +0,0 @@
-#!/usr/bin/env nextflow
-
-nextflow.enable.dsl = 2
-
-include { UCSC_BIGWIGAVERAGEOVERBED } from '../../../../../modules/nf-core/ucsc/bigwigaverageoverbed/main.nf'
-
-workflow test_ucsc_bigwigaverageoverbed {
-    input = [
-        [ id: 'test' ], // meta map
-        [ file(params.test_data['sarscov2']['genome']['test_bed'], checkIfExists: true ) ]
-    ]
-    bigwig = file(params.test_data['sarscov2']['illumina']['test_bigwig'], checkIfExists: true)
-
-    UCSC_BIGWIGAVERAGEOVERBED ( input, bigwig )
-}
diff --git a/tests/modules/nf-core/ucsc/bigwigaverageoverbed/nextflow.config b/tests/modules/nf-core/ucsc/bigwigaverageoverbed/nextflow.config
deleted file mode 100644
index 8730f1c4b93..00000000000
--- a/tests/modules/nf-core/ucsc/bigwigaverageoverbed/nextflow.config
+++ /dev/null
@@ -1,5 +0,0 @@
-process {
-
-    publishDir = { "${params.outdir}/${task.process.tokenize(':')[-1].tokenize('_')[0].toLowerCase()}" }
-
-}
diff --git a/tests/modules/nf-core/ucsc/bigwigaverageoverbed/test.yml b/tests/modules/nf-core/ucsc/bigwigaverageoverbed/test.yml
deleted file mode 100644
index f6fbf57d842..00000000000
--- a/tests/modules/nf-core/ucsc/bigwigaverageoverbed/test.yml
+++ /dev/null
@@ -1,9 +0,0 @@
-- name: ucsc bigwigaverageoverbed test_ucsc_bigwigaverageoverbed
-  command: nextflow run ./tests/modules/nf-core/ucsc/bigwigaverageoverbed -entry test_ucsc_bigwigaverageoverbed -c ./tests/config/nextflow.config -c ./tests/modules/nf-core/ucsc/bigwigaverageoverbed/nextflow.config
-  tags:
-    - ucsc
-    - ucsc/bigwigaverageoverbed
-  files:
-    - path: output/ucsc/test.tab
-      md5sum: d92334d90353577571eaf777933dce9b
-    - path: output/ucsc/versions.yml