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Arriba download -- proxy issues #495

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apeltzer opened this issue Aug 8, 2024 · 3 comments · May be fixed by nf-core/modules#6765
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Arriba download -- proxy issues #495

apeltzer opened this issue Aug 8, 2024 · 3 comments · May be fixed by nf-core/modules#6765
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@apeltzer
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apeltzer commented Aug 8, 2024

Description of the bug

could be solved via --no-check-certificate option being added to wget.

Command used and terminal output

Standard run to build reference index

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@apeltzer apeltzer added the bug Something isn't working label Aug 8, 2024
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apeltzer commented Aug 8, 2024

#496

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apeltzer commented Aug 8, 2024

More accurately, the problem is when you're behind a proxy and that interferes with SSL certificates in the chain. WGET then will not do the download, your jobs when building the DB will fail.

Attached PR #496 fixes / addresses this.

@rannick rannick mentioned this issue Oct 10, 2024
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rannick commented Oct 10, 2024

Solved locally and on nf-core/modules with nf-core/modules#6765

@rannick rannick closed this as completed Oct 10, 2024
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Update arriba no check rannick/modules
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@apeltzer @rannick