diff --git a/modules/nf-core/gfaffix/environment.yml b/modules/nf-core/gfaffix/environment.yml index 09e63d2483e..a15bd54a13a 100644 --- a/modules/nf-core/gfaffix/environment.yml +++ b/modules/nf-core/gfaffix/environment.yml @@ -2,6 +2,5 @@ name: gfaffix channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::gfaffix=0.1.5 diff --git a/modules/nf-core/gfastats/environment.yml b/modules/nf-core/gfastats/environment.yml index 1c875ce0f89..c4426e8f760 100644 --- a/modules/nf-core/gfastats/environment.yml +++ b/modules/nf-core/gfastats/environment.yml @@ -2,6 +2,5 @@ name: gfastats channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::gfastats=1.3.6 diff --git a/modules/nf-core/gfatools/gfa2fa/environment.yml b/modules/nf-core/gfatools/gfa2fa/environment.yml index 24da810536f..9168a493a4e 100644 --- a/modules/nf-core/gfatools/gfa2fa/environment.yml +++ b/modules/nf-core/gfatools/gfa2fa/environment.yml @@ -2,6 +2,5 @@ name: gfatools_gfa2fa channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::gfatools=0.5 diff --git a/modules/nf-core/gfatools/stat/environment.yml b/modules/nf-core/gfatools/stat/environment.yml index 63dcb4d0e7f..007b5e0acf9 100644 --- a/modules/nf-core/gfatools/stat/environment.yml +++ b/modules/nf-core/gfatools/stat/environment.yml @@ -2,6 +2,5 @@ name: gfatools_stat channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::gfatools=0.5 diff --git a/modules/nf-core/gffcompare/environment.yml b/modules/nf-core/gffcompare/environment.yml index bcd633ea250..5d9b63eec23 100644 --- a/modules/nf-core/gffcompare/environment.yml +++ b/modules/nf-core/gffcompare/environment.yml @@ -2,6 +2,5 @@ name: gffcompare channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::gffcompare=0.12.6 diff --git a/modules/nf-core/gffread/environment.yml b/modules/nf-core/gffread/environment.yml index c6df58ad065..a7637fe7936 100644 --- a/modules/nf-core/gffread/environment.yml +++ b/modules/nf-core/gffread/environment.yml @@ -2,6 +2,5 @@ name: gffread channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::gffread=0.12.7 diff --git a/modules/nf-core/gget/gget/environment.yml b/modules/nf-core/gget/gget/environment.yml index 3205a531900..24a78fda1d4 100644 --- a/modules/nf-core/gget/gget/environment.yml +++ b/modules/nf-core/gget/gget/environment.yml @@ -2,6 +2,5 @@ name: gget_gget channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::gget=0.27.2 diff --git a/modules/nf-core/glimpse/chunk/environment.yml b/modules/nf-core/glimpse/chunk/environment.yml index 8d71aa915f4..9f2bf582e87 100644 --- a/modules/nf-core/glimpse/chunk/environment.yml +++ b/modules/nf-core/glimpse/chunk/environment.yml @@ -2,6 +2,5 @@ name: glimpse_chunk channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::glimpse-bio=1.1.1 diff --git a/modules/nf-core/glimpse/concordance/environment.yml b/modules/nf-core/glimpse/concordance/environment.yml index 739ab78d7bd..dd54a425031 100644 --- a/modules/nf-core/glimpse/concordance/environment.yml +++ b/modules/nf-core/glimpse/concordance/environment.yml @@ -2,6 +2,5 @@ name: glimpse_concordance channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::glimpse-bio=1.1.1 diff --git a/modules/nf-core/glimpse/ligate/environment.yml b/modules/nf-core/glimpse/ligate/environment.yml index 0f9e9a3327e..272d324f5fd 100644 --- a/modules/nf-core/glimpse/ligate/environment.yml +++ b/modules/nf-core/glimpse/ligate/environment.yml @@ -2,6 +2,5 @@ name: glimpse_ligate channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::glimpse-bio=1.1.1 diff --git a/modules/nf-core/glimpse/phase/environment.yml b/modules/nf-core/glimpse/phase/environment.yml index fc79765abbd..87aaf2dc1ca 100644 --- a/modules/nf-core/glimpse/phase/environment.yml +++ b/modules/nf-core/glimpse/phase/environment.yml @@ -2,6 +2,5 @@ name: glimpse_phase channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::glimpse-bio=1.1.1 diff --git a/modules/nf-core/glimpse/sample/environment.yml b/modules/nf-core/glimpse/sample/environment.yml index d1fe7cad018..0d26eece49b 100644 --- a/modules/nf-core/glimpse/sample/environment.yml +++ b/modules/nf-core/glimpse/sample/environment.yml @@ -2,6 +2,5 @@ name: glimpse_sample channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::glimpse-bio=1.1.1 diff --git a/modules/nf-core/glimpse2/chunk/environment.yml b/modules/nf-core/glimpse2/chunk/environment.yml index 54e5a11143d..621a20826d3 100644 --- a/modules/nf-core/glimpse2/chunk/environment.yml +++ b/modules/nf-core/glimpse2/chunk/environment.yml @@ -2,6 +2,5 @@ name: glimpse2_chunk channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::glimpse-bio=2.0.1 diff --git a/modules/nf-core/glimpse2/concordance/environment.yml b/modules/nf-core/glimpse2/concordance/environment.yml index f40e83177c6..bfa1fd24cef 100644 --- a/modules/nf-core/glimpse2/concordance/environment.yml +++ b/modules/nf-core/glimpse2/concordance/environment.yml @@ -2,6 +2,5 @@ name: glimpse2_concordance channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::glimpse-bio=2.0.1 diff --git a/modules/nf-core/glimpse2/ligate/environment.yml b/modules/nf-core/glimpse2/ligate/environment.yml index 1e5316005ad..fc787e7087f 100644 --- a/modules/nf-core/glimpse2/ligate/environment.yml +++ b/modules/nf-core/glimpse2/ligate/environment.yml @@ -2,6 +2,5 @@ name: glimpse2_ligate channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::glimpse-bio=2.0.1 diff --git a/modules/nf-core/glimpse2/phase/environment.yml b/modules/nf-core/glimpse2/phase/environment.yml index 0e3938c787c..a88a42d0ab0 100644 --- a/modules/nf-core/glimpse2/phase/environment.yml +++ b/modules/nf-core/glimpse2/phase/environment.yml @@ -2,6 +2,5 @@ name: glimpse2_phase channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::glimpse-bio=2.0.1 diff --git a/modules/nf-core/glimpse2/splitreference/environment.yml b/modules/nf-core/glimpse2/splitreference/environment.yml index b283e8356de..04c300dc460 100644 --- a/modules/nf-core/glimpse2/splitreference/environment.yml +++ b/modules/nf-core/glimpse2/splitreference/environment.yml @@ -2,6 +2,5 @@ name: glimpse2_splitreference channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::glimpse-bio=2.0.1 diff --git a/modules/nf-core/glnexus/environment.yml b/modules/nf-core/glnexus/environment.yml index 922214e8c4a..69d400d417e 100644 --- a/modules/nf-core/glnexus/environment.yml +++ b/modules/nf-core/glnexus/environment.yml @@ -2,6 +2,5 @@ name: glnexus channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::glnexus=1.4.1 diff --git a/modules/nf-core/gnu/sort/environment.yml b/modules/nf-core/gnu/sort/environment.yml index eb9b77edda3..db7206200a9 100644 --- a/modules/nf-core/gnu/sort/environment.yml +++ b/modules/nf-core/gnu/sort/environment.yml @@ -4,6 +4,5 @@ name: gnu_sort channels: - conda-forge - bioconda - - defaults dependencies: - conda-forge::coreutils=9.3 diff --git a/modules/nf-core/gnu/split/environment.yml b/modules/nf-core/gnu/split/environment.yml index 5d5d8644647..68a1046615f 100644 --- a/modules/nf-core/gnu/split/environment.yml +++ b/modules/nf-core/gnu/split/environment.yml @@ -4,6 +4,5 @@ name: gnu_split channels: - conda-forge - bioconda - - defaults dependencies: - conda-forge::coreutils=9.3 diff --git a/modules/nf-core/goat/taxonsearch/environment.yml b/modules/nf-core/goat/taxonsearch/environment.yml index e56e71f1e44..6a5e99082b9 100644 --- a/modules/nf-core/goat/taxonsearch/environment.yml +++ b/modules/nf-core/goat/taxonsearch/environment.yml @@ -2,6 +2,5 @@ name: goat_taxonsearch channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::goat=0.2.5 diff --git a/modules/nf-core/goleft/indexcov/environment.yml b/modules/nf-core/goleft/indexcov/environment.yml index b5799272031..d93c3aaac9f 100644 --- a/modules/nf-core/goleft/indexcov/environment.yml +++ b/modules/nf-core/goleft/indexcov/environment.yml @@ -2,6 +2,5 @@ name: goleft_indexcov channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::goleft=0.2.4 diff --git a/modules/nf-core/goleft/indexsplit/environment.yml b/modules/nf-core/goleft/indexsplit/environment.yml index d8c37692adc..192482ae457 100644 --- a/modules/nf-core/goleft/indexsplit/environment.yml +++ b/modules/nf-core/goleft/indexsplit/environment.yml @@ -2,6 +2,5 @@ name: goleft_indexsplit channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::goleft=0.2.4 diff --git a/modules/nf-core/gprofiler2/gost/environment.yml b/modules/nf-core/gprofiler2/gost/environment.yml index 65e5d8f20da..2c01fbcd8c0 100644 --- a/modules/nf-core/gprofiler2/gost/environment.yml +++ b/modules/nf-core/gprofiler2/gost/environment.yml @@ -2,7 +2,6 @@ name: gprofiler2_gost channels: - conda-forge - bioconda - - defaults dependencies: - conda-forge::r-ggplot2=3.4.3 - conda-forge::r-gprofiler2=0.2.2 diff --git a/modules/nf-core/grabix/check/environment.yml b/modules/nf-core/grabix/check/environment.yml index d8c21804e1c..b6540cac8c0 100644 --- a/modules/nf-core/grabix/check/environment.yml +++ b/modules/nf-core/grabix/check/environment.yml @@ -2,6 +2,5 @@ name: grabix_check channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::grabix=0.1.8 diff --git a/modules/nf-core/graphmap2/align/environment.yml b/modules/nf-core/graphmap2/align/environment.yml index f6cd9ca5c89..c153e891453 100644 --- a/modules/nf-core/graphmap2/align/environment.yml +++ b/modules/nf-core/graphmap2/align/environment.yml @@ -2,6 +2,5 @@ name: graphmap2_align channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::graphmap=0.6.3 diff --git a/modules/nf-core/graphmap2/index/environment.yml b/modules/nf-core/graphmap2/index/environment.yml index f2472bd92c1..0bd66ce9d0f 100644 --- a/modules/nf-core/graphmap2/index/environment.yml +++ b/modules/nf-core/graphmap2/index/environment.yml @@ -2,6 +2,5 @@ name: graphmap2_index channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::graphmap=0.6.3 diff --git a/modules/nf-core/graphtyper/genotype/environment.yml b/modules/nf-core/graphtyper/genotype/environment.yml index b4d95c02618..59de16c1bb4 100644 --- a/modules/nf-core/graphtyper/genotype/environment.yml +++ b/modules/nf-core/graphtyper/genotype/environment.yml @@ -2,6 +2,5 @@ name: graphtyper_genotype channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::graphtyper=2.7.2 diff --git a/modules/nf-core/graphtyper/vcfconcatenate/environment.yml b/modules/nf-core/graphtyper/vcfconcatenate/environment.yml index 0bba162dfad..0f22a4f9d51 100644 --- a/modules/nf-core/graphtyper/vcfconcatenate/environment.yml +++ b/modules/nf-core/graphtyper/vcfconcatenate/environment.yml @@ -2,6 +2,5 @@ name: graphtyper_vcfconcatenate channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::graphtyper=2.7.2 diff --git a/modules/nf-core/gridss/gridss/environment.yml b/modules/nf-core/gridss/gridss/environment.yml index 88b38561095..0ce39e865c7 100644 --- a/modules/nf-core/gridss/gridss/environment.yml +++ b/modules/nf-core/gridss/gridss/environment.yml @@ -2,6 +2,5 @@ name: gridss_gridss channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::gridss=2.13.2 diff --git a/modules/nf-core/gsea/gsea/environment.yml b/modules/nf-core/gsea/gsea/environment.yml index cb3c41e7ae7..7b463893697 100644 --- a/modules/nf-core/gsea/gsea/environment.yml +++ b/modules/nf-core/gsea/gsea/environment.yml @@ -2,6 +2,5 @@ name: gsea_gsea channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::gsea=4.3.2 diff --git a/modules/nf-core/gstama/collapse/environment.yml b/modules/nf-core/gstama/collapse/environment.yml index 644bc6cfe13..e1cea1e683c 100644 --- a/modules/nf-core/gstama/collapse/environment.yml +++ b/modules/nf-core/gstama/collapse/environment.yml @@ -2,6 +2,5 @@ name: GSTAMA_COLLAPSE channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::gs-tama=1.0.3 diff --git a/modules/nf-core/gstama/merge/environment.yml b/modules/nf-core/gstama/merge/environment.yml index 44d574131a0..2547d1ad349 100644 --- a/modules/nf-core/gstama/merge/environment.yml +++ b/modules/nf-core/gstama/merge/environment.yml @@ -2,6 +2,5 @@ name: gstama_merge channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::gs-tama=1.0.3 diff --git a/modules/nf-core/gstama/polyacleanup/environment.yml b/modules/nf-core/gstama/polyacleanup/environment.yml index 7c143ffa4c2..2001e53a9c7 100644 --- a/modules/nf-core/gstama/polyacleanup/environment.yml +++ b/modules/nf-core/gstama/polyacleanup/environment.yml @@ -2,6 +2,5 @@ name: gstama_polyacleanup channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::gs-tama=1.0.3 diff --git a/modules/nf-core/gt/gff3/environment.yml b/modules/nf-core/gt/gff3/environment.yml index 8289fb311eb..b175ee5eb03 100644 --- a/modules/nf-core/gt/gff3/environment.yml +++ b/modules/nf-core/gt/gff3/environment.yml @@ -4,6 +4,5 @@ name: "gt_gff3" channels: - conda-forge - bioconda - - defaults dependencies: - "bioconda::genometools-genometools=1.6.5" diff --git a/modules/nf-core/gt/gff3validator/environment.yml b/modules/nf-core/gt/gff3validator/environment.yml index ea57ebe06a8..4c570967117 100644 --- a/modules/nf-core/gt/gff3validator/environment.yml +++ b/modules/nf-core/gt/gff3validator/environment.yml @@ -4,6 +4,5 @@ name: "gt_gff3validator" channels: - conda-forge - bioconda - - defaults dependencies: - "bioconda::genometools-genometools=1.6.5" diff --git a/modules/nf-core/gt/ltrharvest/environment.yml b/modules/nf-core/gt/ltrharvest/environment.yml index b4ca03d06b4..eaa25a83b32 100644 --- a/modules/nf-core/gt/ltrharvest/environment.yml +++ b/modules/nf-core/gt/ltrharvest/environment.yml @@ -4,6 +4,5 @@ name: "gt_ltrharvest" channels: - conda-forge - bioconda - - defaults dependencies: - "bioconda::genometools-genometools=1.6.5" diff --git a/modules/nf-core/gt/stat/environment.yml b/modules/nf-core/gt/stat/environment.yml index dca959b3b2c..c3dda07b7df 100644 --- a/modules/nf-core/gt/stat/environment.yml +++ b/modules/nf-core/gt/stat/environment.yml @@ -4,6 +4,5 @@ name: "gt_stat" channels: - conda-forge - bioconda - - defaults dependencies: - "bioconda::genometools-genometools=1.6.5" diff --git a/modules/nf-core/gt/suffixerator/environment.yml b/modules/nf-core/gt/suffixerator/environment.yml index 5e602d5a3c6..d52976bc691 100644 --- a/modules/nf-core/gt/suffixerator/environment.yml +++ b/modules/nf-core/gt/suffixerator/environment.yml @@ -4,6 +4,5 @@ name: "gt_suffixerator" channels: - conda-forge - bioconda - - defaults dependencies: - "bioconda::genometools-genometools=1.6.5" diff --git a/modules/nf-core/gtdbtk/classifywf/environment.yml b/modules/nf-core/gtdbtk/classifywf/environment.yml index 16b8dbb6dc7..ce8d257e0b7 100644 --- a/modules/nf-core/gtdbtk/classifywf/environment.yml +++ b/modules/nf-core/gtdbtk/classifywf/environment.yml @@ -2,6 +2,5 @@ name: gtdbtk_classifywf channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::gtdbtk=2.4.0 diff --git a/modules/nf-core/gtfsort/environment.yml b/modules/nf-core/gtfsort/environment.yml index 88233be343c..80f89e382da 100644 --- a/modules/nf-core/gtfsort/environment.yml +++ b/modules/nf-core/gtfsort/environment.yml @@ -4,6 +4,5 @@ name: "gtfsort" channels: - conda-forge - bioconda - - defaults dependencies: - "bioconda::gtfsort=0.2.2" diff --git a/modules/nf-core/gubbins/environment.yml b/modules/nf-core/gubbins/environment.yml index 91537822360..1d349650ccb 100644 --- a/modules/nf-core/gubbins/environment.yml +++ b/modules/nf-core/gubbins/environment.yml @@ -2,6 +2,5 @@ name: gubbins channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::gubbins=3.0.0 diff --git a/modules/nf-core/gunc/downloaddb/environment.yml b/modules/nf-core/gunc/downloaddb/environment.yml index 737b6261125..25540dddd2f 100644 --- a/modules/nf-core/gunc/downloaddb/environment.yml +++ b/modules/nf-core/gunc/downloaddb/environment.yml @@ -2,6 +2,5 @@ name: gunc_downloaddb channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::gunc=1.0.5 diff --git a/modules/nf-core/gunc/mergecheckm/environment.yml b/modules/nf-core/gunc/mergecheckm/environment.yml index 12513be8cae..fd2d3c5c20b 100644 --- a/modules/nf-core/gunc/mergecheckm/environment.yml +++ b/modules/nf-core/gunc/mergecheckm/environment.yml @@ -2,6 +2,5 @@ name: gunc_mergecheckm channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::gunc=1.0.5 diff --git a/modules/nf-core/gunc/run/environment.yml b/modules/nf-core/gunc/run/environment.yml index 80bbec3001a..e2664b66309 100644 --- a/modules/nf-core/gunc/run/environment.yml +++ b/modules/nf-core/gunc/run/environment.yml @@ -2,6 +2,5 @@ name: gunc_run channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::gunc=1.0.5 diff --git a/modules/nf-core/gunzip/environment.yml b/modules/nf-core/gunzip/environment.yml index 25910b340a5..5ac9b57b381 100644 --- a/modules/nf-core/gunzip/environment.yml +++ b/modules/nf-core/gunzip/environment.yml @@ -2,6 +2,5 @@ name: gunzip channels: - conda-forge - bioconda - - defaults dependencies: - conda-forge::sed=4.7 diff --git a/modules/nf-core/gvcftools/extractvariants/environment.yml b/modules/nf-core/gvcftools/extractvariants/environment.yml index b5c8b28d880..c282b5a7680 100644 --- a/modules/nf-core/gvcftools/extractvariants/environment.yml +++ b/modules/nf-core/gvcftools/extractvariants/environment.yml @@ -2,6 +2,5 @@ name: gvcftools_extractvariants channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::gvcftools=0.17.0 diff --git a/modules/nf-core/hamronization/abricate/environment.yml b/modules/nf-core/hamronization/abricate/environment.yml index 75f349f162f..06be555fad6 100644 --- a/modules/nf-core/hamronization/abricate/environment.yml +++ b/modules/nf-core/hamronization/abricate/environment.yml @@ -2,6 +2,5 @@ name: hamronization_abricate channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::hamronization=1.1.4 diff --git a/modules/nf-core/hamronization/amrfinderplus/environment.yml b/modules/nf-core/hamronization/amrfinderplus/environment.yml index 2f9cb27fb35..cfe8f56ec12 100644 --- a/modules/nf-core/hamronization/amrfinderplus/environment.yml +++ b/modules/nf-core/hamronization/amrfinderplus/environment.yml @@ -2,6 +2,5 @@ name: hamronization_amrfinderplus channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::hamronization=1.1.4 diff --git a/modules/nf-core/hamronization/deeparg/environment.yml b/modules/nf-core/hamronization/deeparg/environment.yml index c9db54c6a5e..5de6c7de196 100644 --- a/modules/nf-core/hamronization/deeparg/environment.yml +++ b/modules/nf-core/hamronization/deeparg/environment.yml @@ -2,6 +2,5 @@ name: hamronization_deeparg channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::hamronization=1.1.4 diff --git a/modules/nf-core/hamronization/fargene/environment.yml b/modules/nf-core/hamronization/fargene/environment.yml index 6507e7d42c6..197d86911bb 100644 --- a/modules/nf-core/hamronization/fargene/environment.yml +++ b/modules/nf-core/hamronization/fargene/environment.yml @@ -2,6 +2,5 @@ name: hamronization_fargene channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::hamronization=1.1.4 diff --git a/modules/nf-core/hamronization/rgi/environment.yml b/modules/nf-core/hamronization/rgi/environment.yml index 91d03e499b4..1b820f26fc1 100644 --- a/modules/nf-core/hamronization/rgi/environment.yml +++ b/modules/nf-core/hamronization/rgi/environment.yml @@ -2,6 +2,5 @@ name: hamronization_rgi channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::hamronization=1.1.4 diff --git a/modules/nf-core/hamronization/summarize/environment.yml b/modules/nf-core/hamronization/summarize/environment.yml index 1872a689cb5..8df49a4be60 100644 --- a/modules/nf-core/hamronization/summarize/environment.yml +++ b/modules/nf-core/hamronization/summarize/environment.yml @@ -2,6 +2,5 @@ name: hamronization_summarize channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::hamronization=1.1.4 diff --git a/modules/nf-core/hapibd/environment.yml b/modules/nf-core/hapibd/environment.yml index 2902e831e19..4c2f52d3d38 100644 --- a/modules/nf-core/hapibd/environment.yml +++ b/modules/nf-core/hapibd/environment.yml @@ -2,6 +2,5 @@ name: hapibd channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::hap-ibd=1.0.rev20May22.818 diff --git a/modules/nf-core/haplocheck/environment.yml b/modules/nf-core/haplocheck/environment.yml index 8d06a67e5ce..04b8a113ddc 100644 --- a/modules/nf-core/haplocheck/environment.yml +++ b/modules/nf-core/haplocheck/environment.yml @@ -2,6 +2,5 @@ name: haplocheck channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::haplocheck=1.3.3 diff --git a/modules/nf-core/haplogrep2/classify/environment.yml b/modules/nf-core/haplogrep2/classify/environment.yml index 12949452f81..b40cef7e8d8 100644 --- a/modules/nf-core/haplogrep2/classify/environment.yml +++ b/modules/nf-core/haplogrep2/classify/environment.yml @@ -2,6 +2,5 @@ name: haplogrep2_classify channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::haplogrep=2.4.0 diff --git a/modules/nf-core/happy/ftxpy/environment.yml b/modules/nf-core/happy/ftxpy/environment.yml index 7324e7b2c58..2d9417a2a51 100644 --- a/modules/nf-core/happy/ftxpy/environment.yml +++ b/modules/nf-core/happy/ftxpy/environment.yml @@ -4,6 +4,5 @@ name: "happy_ftxpy" channels: - conda-forge - bioconda - - defaults dependencies: - "bioconda::hap.py=0.3.15" diff --git a/modules/nf-core/happy/happy/environment.yml b/modules/nf-core/happy/happy/environment.yml index 3d29dcb276d..13069225591 100644 --- a/modules/nf-core/happy/happy/environment.yml +++ b/modules/nf-core/happy/happy/environment.yml @@ -2,6 +2,5 @@ name: happy_happy channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::hap.py=0.3.14 diff --git a/modules/nf-core/happy/prepy/environment.yml b/modules/nf-core/happy/prepy/environment.yml index d1598343f2f..752cf5fd11f 100644 --- a/modules/nf-core/happy/prepy/environment.yml +++ b/modules/nf-core/happy/prepy/environment.yml @@ -2,6 +2,5 @@ name: happy_prepy channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::hap.py=0.3.14 diff --git a/modules/nf-core/happy/sompy/environment.yml b/modules/nf-core/happy/sompy/environment.yml index 64ed7f55643..b8136bb0f07 100644 --- a/modules/nf-core/happy/sompy/environment.yml +++ b/modules/nf-core/happy/sompy/environment.yml @@ -2,6 +2,5 @@ name: happy_sompy channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::hap.py=0.3.14 diff --git a/modules/nf-core/hicap/environment.yml b/modules/nf-core/hicap/environment.yml index a8c3e9de5ba..220480c0e3d 100644 --- a/modules/nf-core/hicap/environment.yml +++ b/modules/nf-core/hicap/environment.yml @@ -2,6 +2,5 @@ name: hicap channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::hicap=1.0.3 diff --git a/modules/nf-core/hicexplorer/hicpca/environment.yml b/modules/nf-core/hicexplorer/hicpca/environment.yml index 0838ab5da61..134a599c094 100644 --- a/modules/nf-core/hicexplorer/hicpca/environment.yml +++ b/modules/nf-core/hicexplorer/hicpca/environment.yml @@ -2,7 +2,6 @@ name: hicexplorer_hicpca channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::hicexplorer=3.7.2 - numpy=1.23.5 diff --git a/modules/nf-core/hifiasm/environment.yml b/modules/nf-core/hifiasm/environment.yml index ede93247d8a..0f0e91832cc 100644 --- a/modules/nf-core/hifiasm/environment.yml +++ b/modules/nf-core/hifiasm/environment.yml @@ -2,6 +2,5 @@ name: hifiasm channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::hifiasm=0.19.8 diff --git a/modules/nf-core/hisat2/align/environment.yml b/modules/nf-core/hisat2/align/environment.yml index 0c1415f94e6..b225909624a 100644 --- a/modules/nf-core/hisat2/align/environment.yml +++ b/modules/nf-core/hisat2/align/environment.yml @@ -2,7 +2,6 @@ name: hisat2_align channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::hisat2=2.2.1 - bioconda::samtools=1.16.1 diff --git a/modules/nf-core/hisat2/build/environment.yml b/modules/nf-core/hisat2/build/environment.yml index 2e67cd3eaaf..f7cd80b84c5 100644 --- a/modules/nf-core/hisat2/build/environment.yml +++ b/modules/nf-core/hisat2/build/environment.yml @@ -2,6 +2,5 @@ name: hisat2_build channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::hisat2=2.2.1 diff --git a/modules/nf-core/hisat2/extractsplicesites/environment.yml b/modules/nf-core/hisat2/extractsplicesites/environment.yml index 4b03e5e4666..818b0821748 100644 --- a/modules/nf-core/hisat2/extractsplicesites/environment.yml +++ b/modules/nf-core/hisat2/extractsplicesites/environment.yml @@ -2,6 +2,5 @@ name: hisat2_extractsplicesites channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::hisat2=2.2.1 diff --git a/modules/nf-core/hlala/preparegraph/environment.yml b/modules/nf-core/hlala/preparegraph/environment.yml index eddce47af2f..d502989bf92 100644 --- a/modules/nf-core/hlala/preparegraph/environment.yml +++ b/modules/nf-core/hlala/preparegraph/environment.yml @@ -2,4 +2,3 @@ name: hlala_preparegraph channels: - conda-forge - bioconda - - defaults diff --git a/modules/nf-core/hlala/typing/environment.yml b/modules/nf-core/hlala/typing/environment.yml index 330ab0a26c9..0e7689fe699 100644 --- a/modules/nf-core/hlala/typing/environment.yml +++ b/modules/nf-core/hlala/typing/environment.yml @@ -2,6 +2,5 @@ name: hlala_typing channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::hla-la=1.0.3 diff --git a/modules/nf-core/hmmcopy/gccounter/environment.yml b/modules/nf-core/hmmcopy/gccounter/environment.yml index ee209530e1a..ee7de112dd6 100644 --- a/modules/nf-core/hmmcopy/gccounter/environment.yml +++ b/modules/nf-core/hmmcopy/gccounter/environment.yml @@ -2,6 +2,5 @@ name: hmmcopy_gccounter channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::hmmcopy=0.1.1 diff --git a/modules/nf-core/hmmcopy/generatemap/environment.yml b/modules/nf-core/hmmcopy/generatemap/environment.yml index 0c647804495..30eeded8f52 100644 --- a/modules/nf-core/hmmcopy/generatemap/environment.yml +++ b/modules/nf-core/hmmcopy/generatemap/environment.yml @@ -2,6 +2,5 @@ name: hmmcopy_generatemap channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::hmmcopy=0.1.1 diff --git a/modules/nf-core/hmmcopy/mapcounter/environment.yml b/modules/nf-core/hmmcopy/mapcounter/environment.yml index 4bdfe0fbad6..ac4b44a7905 100644 --- a/modules/nf-core/hmmcopy/mapcounter/environment.yml +++ b/modules/nf-core/hmmcopy/mapcounter/environment.yml @@ -2,6 +2,5 @@ name: hmmcopy_mapcounter channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::hmmcopy=0.1.1 diff --git a/modules/nf-core/hmmcopy/readcounter/environment.yml b/modules/nf-core/hmmcopy/readcounter/environment.yml index cfbdf8ac853..b9807fa7bcd 100644 --- a/modules/nf-core/hmmcopy/readcounter/environment.yml +++ b/modules/nf-core/hmmcopy/readcounter/environment.yml @@ -2,6 +2,5 @@ name: hmmcopy_readcounter channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::hmmcopy=0.1.1 diff --git a/modules/nf-core/hmmer/eslalimask/environment.yml b/modules/nf-core/hmmer/eslalimask/environment.yml index ed14ff8637c..d9f25cefc5d 100644 --- a/modules/nf-core/hmmer/eslalimask/environment.yml +++ b/modules/nf-core/hmmer/eslalimask/environment.yml @@ -2,6 +2,5 @@ name: hmmer_eslalimask channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::hmmer=3.3.2 diff --git a/modules/nf-core/hmmer/eslreformat/environment.yml b/modules/nf-core/hmmer/eslreformat/environment.yml index a847b7d3194..83894509c0d 100644 --- a/modules/nf-core/hmmer/eslreformat/environment.yml +++ b/modules/nf-core/hmmer/eslreformat/environment.yml @@ -2,6 +2,5 @@ name: hmmer_eslreformat channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::hmmer=3.3.2 diff --git a/modules/nf-core/hmmer/hmmalign/environment.yml b/modules/nf-core/hmmer/hmmalign/environment.yml index 9fa6bdafc0d..f2dda074acd 100644 --- a/modules/nf-core/hmmer/hmmalign/environment.yml +++ b/modules/nf-core/hmmer/hmmalign/environment.yml @@ -2,6 +2,5 @@ name: hmmer_hmmalign channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::hmmer=3.3.2 diff --git a/modules/nf-core/hmmer/hmmbuild/environment.yml b/modules/nf-core/hmmer/hmmbuild/environment.yml index 1957ad5c63a..5eb083ed9ed 100644 --- a/modules/nf-core/hmmer/hmmbuild/environment.yml +++ b/modules/nf-core/hmmer/hmmbuild/environment.yml @@ -2,6 +2,5 @@ name: hmmer_hmmbuild channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::hmmer=3.3.2 diff --git a/modules/nf-core/hmmer/hmmfetch/environment.yml b/modules/nf-core/hmmer/hmmfetch/environment.yml index 05544c29d99..fcbe89c2a04 100644 --- a/modules/nf-core/hmmer/hmmfetch/environment.yml +++ b/modules/nf-core/hmmer/hmmfetch/environment.yml @@ -2,6 +2,5 @@ name: hmmer_hmmfetch channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::hmmer=3.3.2 diff --git a/modules/nf-core/hmmer/hmmsearch/environment.yml b/modules/nf-core/hmmer/hmmsearch/environment.yml index d672c2b31c7..5eb41c73d23 100644 --- a/modules/nf-core/hmmer/hmmsearch/environment.yml +++ b/modules/nf-core/hmmer/hmmsearch/environment.yml @@ -2,6 +2,5 @@ name: hmmer_hmmsearch channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::hmmer=3.4 diff --git a/modules/nf-core/hmtnote/annotate/environment.yml b/modules/nf-core/hmtnote/annotate/environment.yml index 46bd87aa052..e322363aa5d 100644 --- a/modules/nf-core/hmtnote/annotate/environment.yml +++ b/modules/nf-core/hmtnote/annotate/environment.yml @@ -2,6 +2,5 @@ name: hmtnote_annotate channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::hmtnote=0.7.2 diff --git a/modules/nf-core/homer/annotatepeaks/environment.yml b/modules/nf-core/homer/annotatepeaks/environment.yml index aef00e188a9..f6522d69503 100644 --- a/modules/nf-core/homer/annotatepeaks/environment.yml +++ b/modules/nf-core/homer/annotatepeaks/environment.yml @@ -2,6 +2,5 @@ name: homer_annotatepeaks channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::homer=4.11 diff --git a/modules/nf-core/homer/findpeaks/environment.yml b/modules/nf-core/homer/findpeaks/environment.yml index a5766cfb740..6488b3b8b1a 100644 --- a/modules/nf-core/homer/findpeaks/environment.yml +++ b/modules/nf-core/homer/findpeaks/environment.yml @@ -2,6 +2,5 @@ name: homer_findpeaks channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::homer=4.11=pl526hc9558a2_3 diff --git a/modules/nf-core/homer/maketagdirectory/environment.yml b/modules/nf-core/homer/maketagdirectory/environment.yml index c3ad2cc9db4..d272759e20c 100644 --- a/modules/nf-core/homer/maketagdirectory/environment.yml +++ b/modules/nf-core/homer/maketagdirectory/environment.yml @@ -2,7 +2,6 @@ name: homer_maketagdirectory channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::homer=4.11 - bioconda::samtools=1.11 diff --git a/modules/nf-core/homer/makeucscfile/environment.yml b/modules/nf-core/homer/makeucscfile/environment.yml index 79963b3491c..26ece2af0b7 100644 --- a/modules/nf-core/homer/makeucscfile/environment.yml +++ b/modules/nf-core/homer/makeucscfile/environment.yml @@ -2,6 +2,5 @@ name: homer_makeucscfile channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::homer=4.11=pl526hc9558a2_3 diff --git a/modules/nf-core/homer/pos2bed/environment.yml b/modules/nf-core/homer/pos2bed/environment.yml index 94ed9904883..9e8daa8729f 100644 --- a/modules/nf-core/homer/pos2bed/environment.yml +++ b/modules/nf-core/homer/pos2bed/environment.yml @@ -2,6 +2,5 @@ name: homer_pos2bed channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::homer=4.11 diff --git a/modules/nf-core/hpsuissero/environment.yml b/modules/nf-core/hpsuissero/environment.yml index 3abdae453d3..30348b36d65 100644 --- a/modules/nf-core/hpsuissero/environment.yml +++ b/modules/nf-core/hpsuissero/environment.yml @@ -2,6 +2,5 @@ name: hpsuissero channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::hpsuissero=1.0.1 diff --git a/modules/nf-core/htseq/count/environment.yml b/modules/nf-core/htseq/count/environment.yml index 4c11f606f2a..f43b05bd07c 100644 --- a/modules/nf-core/htseq/count/environment.yml +++ b/modules/nf-core/htseq/count/environment.yml @@ -2,6 +2,5 @@ name: htseq_count channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::htseq=2.0.3 diff --git a/modules/nf-core/htsnimtools/vcfcheck/environment.yml b/modules/nf-core/htsnimtools/vcfcheck/environment.yml index d4c9841e0c2..eecb19c1a54 100644 --- a/modules/nf-core/htsnimtools/vcfcheck/environment.yml +++ b/modules/nf-core/htsnimtools/vcfcheck/environment.yml @@ -4,6 +4,5 @@ name: "htsnimtools_vcfcheck" channels: - conda-forge - bioconda - - defaults dependencies: - "bioconda::hts-nim-tools=0.3.11" diff --git a/modules/nf-core/humid/environment.yml b/modules/nf-core/humid/environment.yml index d8004476697..bd8154ae57c 100644 --- a/modules/nf-core/humid/environment.yml +++ b/modules/nf-core/humid/environment.yml @@ -4,6 +4,5 @@ name: "humid" channels: - conda-forge - bioconda - - defaults dependencies: - "bioconda::humid=1.0.4" diff --git a/modules/nf-core/hypo/environment.yml b/modules/nf-core/hypo/environment.yml index dd2c6e25118..70e432fada7 100644 --- a/modules/nf-core/hypo/environment.yml +++ b/modules/nf-core/hypo/environment.yml @@ -2,6 +2,5 @@ name: hypo channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::hypo=1.0.3 diff --git a/modules/nf-core/ichorcna/createpon/environment.yml b/modules/nf-core/ichorcna/createpon/environment.yml index ea511a17441..6deb952f34e 100644 --- a/modules/nf-core/ichorcna/createpon/environment.yml +++ b/modules/nf-core/ichorcna/createpon/environment.yml @@ -2,6 +2,5 @@ name: ichorcna_createpon channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::r-ichorcna=0.3.2 diff --git a/modules/nf-core/ichorcna/run/environment.yml b/modules/nf-core/ichorcna/run/environment.yml index 671b6d5514e..1f50af47fcc 100644 --- a/modules/nf-core/ichorcna/run/environment.yml +++ b/modules/nf-core/ichorcna/run/environment.yml @@ -2,6 +2,5 @@ name: ichorcna_run channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::r-ichorcna=0.3.2 diff --git a/modules/nf-core/icountmini/metagene/environment.yml b/modules/nf-core/icountmini/metagene/environment.yml index f2edecc4f0f..7302ab5ec6f 100644 --- a/modules/nf-core/icountmini/metagene/environment.yml +++ b/modules/nf-core/icountmini/metagene/environment.yml @@ -2,6 +2,5 @@ name: icountmini_metagene channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::icount-mini=3.0.1 diff --git a/modules/nf-core/icountmini/peaks/environment.yml b/modules/nf-core/icountmini/peaks/environment.yml index 11a5125dcc9..eb1836fa143 100644 --- a/modules/nf-core/icountmini/peaks/environment.yml +++ b/modules/nf-core/icountmini/peaks/environment.yml @@ -2,6 +2,5 @@ name: icountmini_peaks channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::icount-mini=2.0.3 diff --git a/modules/nf-core/icountmini/segment/environment.yml b/modules/nf-core/icountmini/segment/environment.yml index ec862204988..cb031c30974 100644 --- a/modules/nf-core/icountmini/segment/environment.yml +++ b/modules/nf-core/icountmini/segment/environment.yml @@ -2,6 +2,5 @@ name: icountmini_segment channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::icount-mini=2.0.3 diff --git a/modules/nf-core/icountmini/sigxls/environment.yml b/modules/nf-core/icountmini/sigxls/environment.yml index 083f6cd3bcc..841299df146 100644 --- a/modules/nf-core/icountmini/sigxls/environment.yml +++ b/modules/nf-core/icountmini/sigxls/environment.yml @@ -2,6 +2,5 @@ name: icountmini_sigxls channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::icount-mini=2.0.3 diff --git a/modules/nf-core/icountmini/summary/environment.yml b/modules/nf-core/icountmini/summary/environment.yml index 253eaf5179c..430a34213b7 100644 --- a/modules/nf-core/icountmini/summary/environment.yml +++ b/modules/nf-core/icountmini/summary/environment.yml @@ -2,6 +2,5 @@ name: icountmini_summary channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::icount-mini=2.0.3 diff --git a/modules/nf-core/idemux/environment.yml b/modules/nf-core/idemux/environment.yml index fa878d7a8d1..f319b027573 100644 --- a/modules/nf-core/idemux/environment.yml +++ b/modules/nf-core/idemux/environment.yml @@ -4,6 +4,5 @@ name: "idemux" channels: - conda-forge - bioconda - - defaults dependencies: - "bioconda::idemux=0.1.6" diff --git a/modules/nf-core/idr/environment.yml b/modules/nf-core/idr/environment.yml index 51378273997..2790cc3fa4a 100644 --- a/modules/nf-core/idr/environment.yml +++ b/modules/nf-core/idr/environment.yml @@ -2,6 +2,5 @@ name: idr channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::idr=2.0.4.2 diff --git a/modules/nf-core/igv/js/environment.yml b/modules/nf-core/igv/js/environment.yml index 7604b3c1012..4d1d9fe95fa 100644 --- a/modules/nf-core/igv/js/environment.yml +++ b/modules/nf-core/igv/js/environment.yml @@ -2,6 +2,5 @@ name: igv_js channels: - conda-forge - bioconda - - defaults dependencies: - conda-forge::sed=4.7 diff --git a/modules/nf-core/igvreports/environment.yml b/modules/nf-core/igvreports/environment.yml index 5ed725f46e9..d47c595bf80 100644 --- a/modules/nf-core/igvreports/environment.yml +++ b/modules/nf-core/igvreports/environment.yml @@ -4,6 +4,5 @@ name: "igvreports" channels: - conda-forge - bioconda - - defaults dependencies: - "bioconda::igv-reports=1.12.0" diff --git a/modules/nf-core/ilastik/multicut/environment.yml b/modules/nf-core/ilastik/multicut/environment.yml index ecd6fa335bb..d9088166ac8 100644 --- a/modules/nf-core/ilastik/multicut/environment.yml +++ b/modules/nf-core/ilastik/multicut/environment.yml @@ -2,4 +2,3 @@ name: ilastik_multicut channels: - conda-forge - bioconda - - defaults diff --git a/modules/nf-core/ilastik/pixelclassification/environment.yml b/modules/nf-core/ilastik/pixelclassification/environment.yml index a8dafc2c0b2..aa14f6e1963 100644 --- a/modules/nf-core/ilastik/pixelclassification/environment.yml +++ b/modules/nf-core/ilastik/pixelclassification/environment.yml @@ -2,4 +2,3 @@ name: ilastik_pixelclassification channels: - conda-forge - bioconda - - defaults diff --git a/modules/nf-core/instrain/compare/environment.yml b/modules/nf-core/instrain/compare/environment.yml index d0a2ae952e8..c2f006da49c 100644 --- a/modules/nf-core/instrain/compare/environment.yml +++ b/modules/nf-core/instrain/compare/environment.yml @@ -2,6 +2,5 @@ name: instrain_compare channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::instrain=1.6.1 diff --git a/modules/nf-core/instrain/profile/environment.yml b/modules/nf-core/instrain/profile/environment.yml index 2b9ea6d670a..81da43a2dd1 100644 --- a/modules/nf-core/instrain/profile/environment.yml +++ b/modules/nf-core/instrain/profile/environment.yml @@ -2,6 +2,5 @@ name: instrain_profile channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::instrain=1.6.1 diff --git a/modules/nf-core/interproscan/environment.yml b/modules/nf-core/interproscan/environment.yml index 36ec6fafd8c..253230b9800 100644 --- a/modules/nf-core/interproscan/environment.yml +++ b/modules/nf-core/interproscan/environment.yml @@ -2,6 +2,5 @@ name: interproscan channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::interproscan=5.59_91.0 diff --git a/modules/nf-core/iphop/download/environment.yml b/modules/nf-core/iphop/download/environment.yml index 7b90c7ba16d..80d09e55a5f 100644 --- a/modules/nf-core/iphop/download/environment.yml +++ b/modules/nf-core/iphop/download/environment.yml @@ -2,6 +2,5 @@ name: iphop_download channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::iphop=1.3.2 diff --git a/modules/nf-core/iphop/predict/environment.yml b/modules/nf-core/iphop/predict/environment.yml index 5dda3a70a99..eaf429f2508 100644 --- a/modules/nf-core/iphop/predict/environment.yml +++ b/modules/nf-core/iphop/predict/environment.yml @@ -2,6 +2,5 @@ name: iphop_predict channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::iphop=1.3.2 diff --git a/modules/nf-core/iqtree/environment.yml b/modules/nf-core/iqtree/environment.yml index 106878180ba..a0c55d684eb 100644 --- a/modules/nf-core/iqtree/environment.yml +++ b/modules/nf-core/iqtree/environment.yml @@ -2,6 +2,5 @@ name: iqtree channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::iqtree=2.3.4 diff --git a/modules/nf-core/islandpath/environment.yml b/modules/nf-core/islandpath/environment.yml index 13982a73fec..1ddd6b1ff23 100644 --- a/modules/nf-core/islandpath/environment.yml +++ b/modules/nf-core/islandpath/environment.yml @@ -2,6 +2,5 @@ name: islandpath channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::islandpath=1.0.6 diff --git a/modules/nf-core/ismapper/environment.yml b/modules/nf-core/ismapper/environment.yml index 0a178373f8f..eb5539a7cea 100644 --- a/modules/nf-core/ismapper/environment.yml +++ b/modules/nf-core/ismapper/environment.yml @@ -2,6 +2,5 @@ name: ismapper channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::ismapper=2.0.2 diff --git a/modules/nf-core/isoseq/cluster/environment.yml b/modules/nf-core/isoseq/cluster/environment.yml index bb5355772c6..5bfbe5989e7 100644 --- a/modules/nf-core/isoseq/cluster/environment.yml +++ b/modules/nf-core/isoseq/cluster/environment.yml @@ -2,6 +2,5 @@ name: isoseq_cluster channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::isoseq=4.0.0 diff --git a/modules/nf-core/isoseq/refine/environment.yml b/modules/nf-core/isoseq/refine/environment.yml index 05fb46ff5e4..5a73a3d444b 100644 --- a/modules/nf-core/isoseq/refine/environment.yml +++ b/modules/nf-core/isoseq/refine/environment.yml @@ -2,6 +2,5 @@ name: isoseq_refine channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::isoseq=4.0.0 diff --git a/modules/nf-core/isoseq3/tag/environment.yml b/modules/nf-core/isoseq3/tag/environment.yml index d773d60297e..d34c26f0137 100644 --- a/modules/nf-core/isoseq3/tag/environment.yml +++ b/modules/nf-core/isoseq3/tag/environment.yml @@ -4,6 +4,5 @@ name: "isoseq3_tag" channels: - conda-forge - bioconda - - defaults dependencies: - "bioconda::isoseq3=4.0.0" diff --git a/modules/nf-core/ivar/consensus/environment.yml b/modules/nf-core/ivar/consensus/environment.yml index c7b87d02480..ad44cf2fe78 100644 --- a/modules/nf-core/ivar/consensus/environment.yml +++ b/modules/nf-core/ivar/consensus/environment.yml @@ -2,6 +2,5 @@ name: ivar_consensus channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::ivar=1.4 diff --git a/modules/nf-core/ivar/trim/environment.yml b/modules/nf-core/ivar/trim/environment.yml index 7fb8b3a2910..9ec096fbcb1 100644 --- a/modules/nf-core/ivar/trim/environment.yml +++ b/modules/nf-core/ivar/trim/environment.yml @@ -2,6 +2,5 @@ name: ivar_trim channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::ivar=1.4 diff --git a/modules/nf-core/ivar/variants/environment.yml b/modules/nf-core/ivar/variants/environment.yml index 7431cac4ff1..3b5c715a519 100644 --- a/modules/nf-core/ivar/variants/environment.yml +++ b/modules/nf-core/ivar/variants/environment.yml @@ -2,6 +2,5 @@ name: ivar_variants channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::ivar=1.4 diff --git a/modules/nf-core/jasminesv/environment.yml b/modules/nf-core/jasminesv/environment.yml index 7b26adfe350..a41af59ded9 100644 --- a/modules/nf-core/jasminesv/environment.yml +++ b/modules/nf-core/jasminesv/environment.yml @@ -2,7 +2,6 @@ name: jasminesv channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::jasminesv=1.1.5 - bioconda::htslib=1.15.1 diff --git a/modules/nf-core/jupyternotebook/environment.yml b/modules/nf-core/jupyternotebook/environment.yml index 98fc481a700..8b2b1861931 100644 --- a/modules/nf-core/jupyternotebook/environment.yml +++ b/modules/nf-core/jupyternotebook/environment.yml @@ -2,7 +2,6 @@ name: jupyternotebook channels: - conda-forge - bioconda - - defaults dependencies: - conda-forge::ipykernel=6.0.3 - conda-forge::jupytext=1.11.4 diff --git a/modules/nf-core/kaiju/kaiju/environment.yml b/modules/nf-core/kaiju/kaiju/environment.yml index baac450b265..a7131dc9464 100644 --- a/modules/nf-core/kaiju/kaiju/environment.yml +++ b/modules/nf-core/kaiju/kaiju/environment.yml @@ -2,6 +2,5 @@ name: kaiju_kaiju channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::kaiju=1.10.0 diff --git a/modules/nf-core/kaiju/kaiju2krona/environment.yml b/modules/nf-core/kaiju/kaiju2krona/environment.yml index 2905be97f69..7b2c7f533f0 100644 --- a/modules/nf-core/kaiju/kaiju2krona/environment.yml +++ b/modules/nf-core/kaiju/kaiju2krona/environment.yml @@ -2,6 +2,5 @@ name: kaiju_kaiju2krona channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::kaiju=1.10.0 diff --git a/modules/nf-core/kaiju/kaiju2table/environment.yml b/modules/nf-core/kaiju/kaiju2table/environment.yml index 18685f41576..501efbaee47 100644 --- a/modules/nf-core/kaiju/kaiju2table/environment.yml +++ b/modules/nf-core/kaiju/kaiju2table/environment.yml @@ -2,6 +2,5 @@ name: kaiju_kaiju2table channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::kaiju=1.10.0 diff --git a/modules/nf-core/kaiju/mergeoutputs/environment.yml b/modules/nf-core/kaiju/mergeoutputs/environment.yml index c42f573c131..fcca7c4d9bc 100644 --- a/modules/nf-core/kaiju/mergeoutputs/environment.yml +++ b/modules/nf-core/kaiju/mergeoutputs/environment.yml @@ -4,6 +4,5 @@ name: "kaiju_mergeoutputs" channels: - conda-forge - bioconda - - defaults dependencies: - "bioconda::kaiju=1.10.0" diff --git a/modules/nf-core/kaiju/mkfmi/environment.yml b/modules/nf-core/kaiju/mkfmi/environment.yml index 9b66ea1eaa1..8320527f157 100644 --- a/modules/nf-core/kaiju/mkfmi/environment.yml +++ b/modules/nf-core/kaiju/mkfmi/environment.yml @@ -2,6 +2,5 @@ name: kaiju_mkfmi channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::kaiju=1.10.0 diff --git a/modules/nf-core/kalign/align/environment.yml b/modules/nf-core/kalign/align/environment.yml index 93563eaeb56..0dada6bff81 100644 --- a/modules/nf-core/kalign/align/environment.yml +++ b/modules/nf-core/kalign/align/environment.yml @@ -2,7 +2,6 @@ name: kalign_align channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::kalign3=3.4.0 - conda-forge::pigz=2.8 diff --git a/modules/nf-core/kallisto/index/environment.yml b/modules/nf-core/kallisto/index/environment.yml index 471b006a898..acbe867f09e 100644 --- a/modules/nf-core/kallisto/index/environment.yml +++ b/modules/nf-core/kallisto/index/environment.yml @@ -2,6 +2,5 @@ name: kallisto_index channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::kallisto=0.48.0 diff --git a/modules/nf-core/kallisto/quant/environment.yml b/modules/nf-core/kallisto/quant/environment.yml index c2d6306bb2c..2e41665f17c 100644 --- a/modules/nf-core/kallisto/quant/environment.yml +++ b/modules/nf-core/kallisto/quant/environment.yml @@ -2,6 +2,5 @@ name: kallisto_quant channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::kallisto=0.48.0 diff --git a/modules/nf-core/kallistobustools/count/environment.yml b/modules/nf-core/kallistobustools/count/environment.yml index 024f0afcad8..1eac321fc89 100644 --- a/modules/nf-core/kallistobustools/count/environment.yml +++ b/modules/nf-core/kallistobustools/count/environment.yml @@ -2,6 +2,5 @@ name: kallistobustools_count channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::kb-python=0.28.2 diff --git a/modules/nf-core/kallistobustools/ref/environment.yml b/modules/nf-core/kallistobustools/ref/environment.yml index 6ae07a8c395..4556643e889 100644 --- a/modules/nf-core/kallistobustools/ref/environment.yml +++ b/modules/nf-core/kallistobustools/ref/environment.yml @@ -2,7 +2,6 @@ name: kallistobustools_ref channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::kb-python=0.28.2 - conda-forge::requests>=2.23.0 diff --git a/modules/nf-core/kat/hist/environment.yml b/modules/nf-core/kat/hist/environment.yml index 430a40fbee9..94ebfa4d8a0 100644 --- a/modules/nf-core/kat/hist/environment.yml +++ b/modules/nf-core/kat/hist/environment.yml @@ -2,6 +2,5 @@ name: kat_hist channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::kat=2.4.2 diff --git a/modules/nf-core/khmer/normalizebymedian/environment.yml b/modules/nf-core/khmer/normalizebymedian/environment.yml index 1ffa182980f..fca3c4b9cf1 100644 --- a/modules/nf-core/khmer/normalizebymedian/environment.yml +++ b/modules/nf-core/khmer/normalizebymedian/environment.yml @@ -2,6 +2,5 @@ name: khmer_normalizebymedian channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::khmer=3.0.0a3 diff --git a/modules/nf-core/khmer/uniquekmers/environment.yml b/modules/nf-core/khmer/uniquekmers/environment.yml index 9b7b75460b1..385fd17f5a9 100644 --- a/modules/nf-core/khmer/uniquekmers/environment.yml +++ b/modules/nf-core/khmer/uniquekmers/environment.yml @@ -2,6 +2,5 @@ name: khmer_uniquekmers channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::khmer=3.0.0a3 diff --git a/modules/nf-core/kleborate/environment.yml b/modules/nf-core/kleborate/environment.yml index 63ee9f40b47..7199b1db6db 100644 --- a/modules/nf-core/kleborate/environment.yml +++ b/modules/nf-core/kleborate/environment.yml @@ -2,6 +2,5 @@ name: kleborate channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::kleborate=2.1.0 diff --git a/modules/nf-core/kmcp/compute/environment.yml b/modules/nf-core/kmcp/compute/environment.yml index e8da5a5ca56..653b060c003 100644 --- a/modules/nf-core/kmcp/compute/environment.yml +++ b/modules/nf-core/kmcp/compute/environment.yml @@ -2,6 +2,5 @@ name: kmcp_compute channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::kmcp=0.9.4 diff --git a/modules/nf-core/kmcp/index/environment.yml b/modules/nf-core/kmcp/index/environment.yml index 0490aaa025c..0893180bdb4 100644 --- a/modules/nf-core/kmcp/index/environment.yml +++ b/modules/nf-core/kmcp/index/environment.yml @@ -2,6 +2,5 @@ name: kmcp_index channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::kmcp=0.9.4 diff --git a/modules/nf-core/kmcp/merge/environment.yml b/modules/nf-core/kmcp/merge/environment.yml index 5436b8bbb7f..e1d12547322 100644 --- a/modules/nf-core/kmcp/merge/environment.yml +++ b/modules/nf-core/kmcp/merge/environment.yml @@ -2,6 +2,5 @@ name: kmcp_merge channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::kmcp=0.9.1 diff --git a/modules/nf-core/kmcp/profile/environment.yml b/modules/nf-core/kmcp/profile/environment.yml index 43de2a643b8..18dfb30a47f 100644 --- a/modules/nf-core/kmcp/profile/environment.yml +++ b/modules/nf-core/kmcp/profile/environment.yml @@ -2,6 +2,5 @@ name: kmcp_profile channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::kmcp=0.9.4 diff --git a/modules/nf-core/kmcp/search/environment.yml b/modules/nf-core/kmcp/search/environment.yml index 397fcb8af0f..38d166008c4 100644 --- a/modules/nf-core/kmcp/search/environment.yml +++ b/modules/nf-core/kmcp/search/environment.yml @@ -2,6 +2,5 @@ name: kmcp_search channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::kmcp=0.9.4 diff --git a/modules/nf-core/kofamscan/environment.yml b/modules/nf-core/kofamscan/environment.yml index 12a6b4bfb79..92d368798f5 100644 --- a/modules/nf-core/kofamscan/environment.yml +++ b/modules/nf-core/kofamscan/environment.yml @@ -2,6 +2,5 @@ name: kofamscan channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::kofamscan=1.3.0 diff --git a/modules/nf-core/kraken2/add/environment.yml b/modules/nf-core/kraken2/add/environment.yml index 24b1c0e1011..cee1faee789 100644 --- a/modules/nf-core/kraken2/add/environment.yml +++ b/modules/nf-core/kraken2/add/environment.yml @@ -4,7 +4,6 @@ name: "kraken2_add" channels: - conda-forge - bioconda - - defaults dependencies: - "bioconda::kraken2=2.1.3" - "coreutils=9.4" diff --git a/modules/nf-core/kraken2/build/environment.yml b/modules/nf-core/kraken2/build/environment.yml index 5624c5eaa39..8f57d855ebf 100644 --- a/modules/nf-core/kraken2/build/environment.yml +++ b/modules/nf-core/kraken2/build/environment.yml @@ -4,7 +4,6 @@ name: "kraken2_build" channels: - conda-forge - bioconda - - defaults dependencies: - "bioconda::kraken2=2.1.3" - "coreutils=9.4" diff --git a/modules/nf-core/kraken2/kraken2/environment.yml b/modules/nf-core/kraken2/kraken2/environment.yml index 0c067feebb4..2f246d4bc3e 100644 --- a/modules/nf-core/kraken2/kraken2/environment.yml +++ b/modules/nf-core/kraken2/kraken2/environment.yml @@ -2,7 +2,6 @@ name: kraken2_kraken2 channels: - conda-forge - bioconda - - defaults dependencies: - "bioconda::kraken2=2.1.3" - "coreutils=9.4" diff --git a/modules/nf-core/krakentools/combinekreports/environment.yml b/modules/nf-core/krakentools/combinekreports/environment.yml index 770cdde08ee..f5e4b275ccc 100644 --- a/modules/nf-core/krakentools/combinekreports/environment.yml +++ b/modules/nf-core/krakentools/combinekreports/environment.yml @@ -2,6 +2,5 @@ name: krakentools_combinekreports channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::krakentools=1.2 diff --git a/modules/nf-core/krakentools/extractkrakenreads/environment.yml b/modules/nf-core/krakentools/extractkrakenreads/environment.yml index 96eb7fd1544..b3ceb1fa2be 100644 --- a/modules/nf-core/krakentools/extractkrakenreads/environment.yml +++ b/modules/nf-core/krakentools/extractkrakenreads/environment.yml @@ -4,6 +4,5 @@ name: "krakentools_extractkrakenreads" channels: - conda-forge - bioconda - - defaults dependencies: - "bioconda::krakentools=1.2" diff --git a/modules/nf-core/krakentools/kreport2krona/environment.yml b/modules/nf-core/krakentools/kreport2krona/environment.yml index ea49a77ccbc..8038233ff35 100644 --- a/modules/nf-core/krakentools/kreport2krona/environment.yml +++ b/modules/nf-core/krakentools/kreport2krona/environment.yml @@ -2,6 +2,5 @@ name: krakentools_kreport2krona channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::krakentools=1.2 diff --git a/modules/nf-core/krakenuniq/build/environment.yml b/modules/nf-core/krakenuniq/build/environment.yml index d99b5ef9422..8a97660ae75 100644 --- a/modules/nf-core/krakenuniq/build/environment.yml +++ b/modules/nf-core/krakenuniq/build/environment.yml @@ -2,6 +2,5 @@ name: krakenuniq_build channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::krakenuniq=1.0.4 diff --git a/modules/nf-core/krakenuniq/download/environment.yml b/modules/nf-core/krakenuniq/download/environment.yml index 4160fbec0fd..c5712f07eae 100644 --- a/modules/nf-core/krakenuniq/download/environment.yml +++ b/modules/nf-core/krakenuniq/download/environment.yml @@ -2,6 +2,5 @@ name: krakenuniq_download channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::krakenuniq=1.0.4 diff --git a/modules/nf-core/krakenuniq/preloadedkrakenuniq/environment.yml b/modules/nf-core/krakenuniq/preloadedkrakenuniq/environment.yml index 11bbb879fc2..1ef7a21c72c 100644 --- a/modules/nf-core/krakenuniq/preloadedkrakenuniq/environment.yml +++ b/modules/nf-core/krakenuniq/preloadedkrakenuniq/environment.yml @@ -2,6 +2,5 @@ name: krakenuniq_preloadedkrakenuniq channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::krakenuniq=1.0.4 diff --git a/modules/nf-core/krona/kronadb/environment.yml b/modules/nf-core/krona/kronadb/environment.yml index 1646628f01c..eb5791fcf6c 100644 --- a/modules/nf-core/krona/kronadb/environment.yml +++ b/modules/nf-core/krona/kronadb/environment.yml @@ -2,6 +2,5 @@ name: krona_kronadb channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::krona=2.7.1 diff --git a/modules/nf-core/krona/ktimporttaxonomy/environment.yml b/modules/nf-core/krona/ktimporttaxonomy/environment.yml index 1909e15f311..ca46863b2dc 100644 --- a/modules/nf-core/krona/ktimporttaxonomy/environment.yml +++ b/modules/nf-core/krona/ktimporttaxonomy/environment.yml @@ -2,6 +2,5 @@ name: krona_ktimporttaxonomy channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::krona=2.8 diff --git a/modules/nf-core/krona/ktimporttext/environment.yml b/modules/nf-core/krona/ktimporttext/environment.yml index d36bd65a35a..2c94131ff6f 100644 --- a/modules/nf-core/krona/ktimporttext/environment.yml +++ b/modules/nf-core/krona/ktimporttext/environment.yml @@ -2,6 +2,5 @@ name: krona_ktimporttext channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::krona=2.8.1 diff --git a/modules/nf-core/krona/ktupdatetaxonomy/environment.yml b/modules/nf-core/krona/ktupdatetaxonomy/environment.yml index a2a912962b2..ba3c11062b6 100644 --- a/modules/nf-core/krona/ktupdatetaxonomy/environment.yml +++ b/modules/nf-core/krona/ktupdatetaxonomy/environment.yml @@ -2,6 +2,5 @@ name: krona_ktupdatetaxonomy channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::krona=2.7.1 diff --git a/modules/nf-core/last/dotplot/environment.yml b/modules/nf-core/last/dotplot/environment.yml index b013d4d8b0e..b006bd282d9 100644 --- a/modules/nf-core/last/dotplot/environment.yml +++ b/modules/nf-core/last/dotplot/environment.yml @@ -4,6 +4,5 @@ name: "last_dotplot" channels: - conda-forge - bioconda - - defaults dependencies: - "bioconda::last=1542" diff --git a/modules/nf-core/last/lastal/environment.yml b/modules/nf-core/last/lastal/environment.yml index c3a87c68c1f..022efdb9c62 100644 --- a/modules/nf-core/last/lastal/environment.yml +++ b/modules/nf-core/last/lastal/environment.yml @@ -4,6 +4,5 @@ name: "last_lastal" channels: - conda-forge - bioconda - - defaults dependencies: - "bioconda::last=1542" diff --git a/modules/nf-core/last/lastdb/environment.yml b/modules/nf-core/last/lastdb/environment.yml index 9e98a10ae20..a2e06485025 100644 --- a/modules/nf-core/last/lastdb/environment.yml +++ b/modules/nf-core/last/lastdb/environment.yml @@ -4,6 +4,5 @@ name: "last_lastdb" channels: - conda-forge - bioconda - - defaults dependencies: - "bioconda::last=1542" diff --git a/modules/nf-core/last/mafconvert/environment.yml b/modules/nf-core/last/mafconvert/environment.yml index 009cb82f4ac..e67daa2d196 100644 --- a/modules/nf-core/last/mafconvert/environment.yml +++ b/modules/nf-core/last/mafconvert/environment.yml @@ -4,6 +4,5 @@ name: "last_mafconvert" channels: - conda-forge - bioconda - - defaults dependencies: - "bioconda::last=1542" diff --git a/modules/nf-core/last/mafswap/environment.yml b/modules/nf-core/last/mafswap/environment.yml index cc112af83d4..1dc9aa5ce0f 100644 --- a/modules/nf-core/last/mafswap/environment.yml +++ b/modules/nf-core/last/mafswap/environment.yml @@ -4,6 +4,5 @@ name: "last_mafswap" channels: - conda-forge - bioconda - - defaults dependencies: - "bioconda::last=1542" diff --git a/modules/nf-core/last/postmask/environment.yml b/modules/nf-core/last/postmask/environment.yml index 75ee281150d..f731699d381 100644 --- a/modules/nf-core/last/postmask/environment.yml +++ b/modules/nf-core/last/postmask/environment.yml @@ -4,6 +4,5 @@ name: "last_postmask" channels: - conda-forge - bioconda - - defaults dependencies: - "bioconda::last=1542" diff --git a/modules/nf-core/last/split/environment.yml b/modules/nf-core/last/split/environment.yml index 7d76b55fca1..2319609f697 100644 --- a/modules/nf-core/last/split/environment.yml +++ b/modules/nf-core/last/split/environment.yml @@ -4,6 +4,5 @@ name: "last_split" channels: - conda-forge - bioconda - - defaults dependencies: - "bioconda::last=1542" diff --git a/modules/nf-core/last/train/environment.yml b/modules/nf-core/last/train/environment.yml index 5edaf64fdfc..fe3f62bf555 100644 --- a/modules/nf-core/last/train/environment.yml +++ b/modules/nf-core/last/train/environment.yml @@ -4,6 +4,5 @@ name: "last_train" channels: - conda-forge - bioconda - - defaults dependencies: - "bioconda::last=1542" diff --git a/modules/nf-core/learnmsa/align/environment.yml b/modules/nf-core/learnmsa/align/environment.yml index 124b8d8412a..ab92b078895 100644 --- a/modules/nf-core/learnmsa/align/environment.yml +++ b/modules/nf-core/learnmsa/align/environment.yml @@ -2,7 +2,6 @@ name: learnmsa_align channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::learnmsa=2.0.1 - conda-forge::pigz=2.8 diff --git a/modules/nf-core/leehom/environment.yml b/modules/nf-core/leehom/environment.yml index 85e856fac6f..d7339b817d1 100644 --- a/modules/nf-core/leehom/environment.yml +++ b/modules/nf-core/leehom/environment.yml @@ -2,6 +2,5 @@ name: leehom channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::leehom=1.2.15 diff --git a/modules/nf-core/legsta/environment.yml b/modules/nf-core/legsta/environment.yml index 34d11fcfbe3..ae157ec4a90 100644 --- a/modules/nf-core/legsta/environment.yml +++ b/modules/nf-core/legsta/environment.yml @@ -2,6 +2,5 @@ name: legsta channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::legsta=0.5.1 diff --git a/modules/nf-core/leviosam2/index/environment.yml b/modules/nf-core/leviosam2/index/environment.yml index f59fd991b8f..548afc7c1eb 100644 --- a/modules/nf-core/leviosam2/index/environment.yml +++ b/modules/nf-core/leviosam2/index/environment.yml @@ -3,6 +3,5 @@ name: "leviosam2_index" channels: - conda-forge - bioconda - - defaults dependencies: - "bioconda::leviosam2=0.4.2" diff --git a/modules/nf-core/leviosam2/lift/environment.yml b/modules/nf-core/leviosam2/lift/environment.yml index 35d02420f33..522e9af1d6c 100644 --- a/modules/nf-core/leviosam2/lift/environment.yml +++ b/modules/nf-core/leviosam2/lift/environment.yml @@ -3,6 +3,5 @@ name: "leviosam2_lift" channels: - conda-forge - bioconda - - defaults dependencies: - "bioconda::leviosam2=0.4.2" diff --git a/modules/nf-core/liftoff/environment.yml b/modules/nf-core/liftoff/environment.yml index 8761c9bf73e..171e63a9086 100644 --- a/modules/nf-core/liftoff/environment.yml +++ b/modules/nf-core/liftoff/environment.yml @@ -4,6 +4,5 @@ name: "liftoff" channels: - conda-forge - bioconda - - defaults dependencies: - "bioconda::liftoff=1.6.3" diff --git a/modules/nf-core/lima/environment.yml b/modules/nf-core/lima/environment.yml index a9718bc190d..79628197632 100644 --- a/modules/nf-core/lima/environment.yml +++ b/modules/nf-core/lima/environment.yml @@ -2,6 +2,5 @@ name: lima channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::lima=2.9.0 diff --git a/modules/nf-core/limma/differential/environment.yml b/modules/nf-core/limma/differential/environment.yml index 20188f1254f..f7d0148c01b 100644 --- a/modules/nf-core/limma/differential/environment.yml +++ b/modules/nf-core/limma/differential/environment.yml @@ -2,6 +2,5 @@ name: limma_differential channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::bioconductor-limma=3.54.0 diff --git a/modules/nf-core/lissero/environment.yml b/modules/nf-core/lissero/environment.yml index 46858553607..5dfa8ad482a 100644 --- a/modules/nf-core/lissero/environment.yml +++ b/modules/nf-core/lissero/environment.yml @@ -2,6 +2,5 @@ name: lissero channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::lissero=0.4.9 diff --git a/modules/nf-core/lofreq/alnqual/environment.yml b/modules/nf-core/lofreq/alnqual/environment.yml index 601f477fcc8..7d064428873 100644 --- a/modules/nf-core/lofreq/alnqual/environment.yml +++ b/modules/nf-core/lofreq/alnqual/environment.yml @@ -2,7 +2,6 @@ name: "lofreq_alnqual" channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::lofreq=2.1.5 - bioconda::samtools=1.17 diff --git a/modules/nf-core/lofreq/call/environment.yml b/modules/nf-core/lofreq/call/environment.yml index fbba018d7ba..497b40e9bc2 100644 --- a/modules/nf-core/lofreq/call/environment.yml +++ b/modules/nf-core/lofreq/call/environment.yml @@ -2,6 +2,5 @@ name: lofreq_call channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::lofreq=2.1.5 diff --git a/modules/nf-core/lofreq/callparallel/environment.yml b/modules/nf-core/lofreq/callparallel/environment.yml index 222d145021f..b68813ac8f2 100644 --- a/modules/nf-core/lofreq/callparallel/environment.yml +++ b/modules/nf-core/lofreq/callparallel/environment.yml @@ -2,6 +2,5 @@ name: lofreq_callparallel channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::lofreq=2.1.5 diff --git a/modules/nf-core/lofreq/filter/environment.yml b/modules/nf-core/lofreq/filter/environment.yml index a5a2389c458..8307b82bd6a 100644 --- a/modules/nf-core/lofreq/filter/environment.yml +++ b/modules/nf-core/lofreq/filter/environment.yml @@ -2,6 +2,5 @@ name: lofreq_filter channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::lofreq=2.1.5 diff --git a/modules/nf-core/lofreq/indelqual/environment.yml b/modules/nf-core/lofreq/indelqual/environment.yml index 43d9f2afdcb..abdcb315bb0 100644 --- a/modules/nf-core/lofreq/indelqual/environment.yml +++ b/modules/nf-core/lofreq/indelqual/environment.yml @@ -2,6 +2,5 @@ name: lofreq_indelqual channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::lofreq=2.1.5 diff --git a/modules/nf-core/lofreq/somatic/environment.yml b/modules/nf-core/lofreq/somatic/environment.yml index af6a98fb867..0c08e40e0a9 100644 --- a/modules/nf-core/lofreq/somatic/environment.yml +++ b/modules/nf-core/lofreq/somatic/environment.yml @@ -2,6 +2,5 @@ name: lofreq_somatic channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::lofreq=2.1.5 diff --git a/modules/nf-core/lofreq/viterbi/environment.yml b/modules/nf-core/lofreq/viterbi/environment.yml index d81bc229270..03e5c29b2f5 100644 --- a/modules/nf-core/lofreq/viterbi/environment.yml +++ b/modules/nf-core/lofreq/viterbi/environment.yml @@ -2,7 +2,6 @@ name: "lofreq_viterbi" channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::lofreq=2.1.5 - bioconda::samtools=1.17 diff --git a/modules/nf-core/ltrfinder/environment.yml b/modules/nf-core/ltrfinder/environment.yml index 7f3545975a8..f48647ead41 100644 --- a/modules/nf-core/ltrfinder/environment.yml +++ b/modules/nf-core/ltrfinder/environment.yml @@ -4,6 +4,5 @@ name: "ltrfinder" channels: - conda-forge - bioconda - - defaults dependencies: - "bioconda::ltr_finder_parallel=1.1" diff --git a/modules/nf-core/ltrharvest/environment.yml b/modules/nf-core/ltrharvest/environment.yml index 9337fe23f15..949e26a3cc8 100644 --- a/modules/nf-core/ltrharvest/environment.yml +++ b/modules/nf-core/ltrharvest/environment.yml @@ -4,6 +4,5 @@ name: "ltrharvest" channels: - conda-forge - bioconda - - defaults dependencies: - "bioconda::ltr_harvest_parallel=1.1" diff --git a/modules/nf-core/ltrretriever/lai/environment.yml b/modules/nf-core/ltrretriever/lai/environment.yml index e0e4968237b..b2f57642ce5 100644 --- a/modules/nf-core/ltrretriever/lai/environment.yml +++ b/modules/nf-core/ltrretriever/lai/environment.yml @@ -4,6 +4,5 @@ name: "ltrretriever_lai" channels: - conda-forge - bioconda - - defaults dependencies: - "bioconda::LTR_retriever=2.9.9" diff --git a/modules/nf-core/ltrretriever/ltrretriever/environment.yml b/modules/nf-core/ltrretriever/ltrretriever/environment.yml index f49f07e702a..62647842d7f 100644 --- a/modules/nf-core/ltrretriever/ltrretriever/environment.yml +++ b/modules/nf-core/ltrretriever/ltrretriever/environment.yml @@ -4,6 +4,5 @@ name: "ltrretriever_ltrretriever" channels: - conda-forge - bioconda - - defaults dependencies: - "bioconda::LTR_retriever=2.9.9" diff --git a/modules/nf-core/macrel/contigs/environment.yml b/modules/nf-core/macrel/contigs/environment.yml index e6c11226a21..1e39c568422 100644 --- a/modules/nf-core/macrel/contigs/environment.yml +++ b/modules/nf-core/macrel/contigs/environment.yml @@ -2,6 +2,5 @@ name: macrel_contigs channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::macrel=1.2.0 diff --git a/modules/nf-core/macs2/callpeak/environment.yml b/modules/nf-core/macs2/callpeak/environment.yml index bc42d766dc2..6eca0f163a9 100644 --- a/modules/nf-core/macs2/callpeak/environment.yml +++ b/modules/nf-core/macs2/callpeak/environment.yml @@ -2,6 +2,5 @@ name: macs2_callpeak channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::macs2=2.2.7.1 diff --git a/modules/nf-core/mafft/environment.yml b/modules/nf-core/mafft/environment.yml index 595252e08c0..5a583a3047d 100644 --- a/modules/nf-core/mafft/environment.yml +++ b/modules/nf-core/mafft/environment.yml @@ -2,7 +2,6 @@ name: mafft channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::mafft=7.520 - conda-forge::pigz=2.8 diff --git a/modules/nf-core/mageck/count/environment.yml b/modules/nf-core/mageck/count/environment.yml index c7221d6f77c..16a400a3c37 100644 --- a/modules/nf-core/mageck/count/environment.yml +++ b/modules/nf-core/mageck/count/environment.yml @@ -2,6 +2,5 @@ name: mageck_count channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::mageck=0.5.9.5 diff --git a/modules/nf-core/mageck/mle/environment.yml b/modules/nf-core/mageck/mle/environment.yml index ed2cf00173a..64010867eff 100644 --- a/modules/nf-core/mageck/mle/environment.yml +++ b/modules/nf-core/mageck/mle/environment.yml @@ -2,6 +2,5 @@ name: mageck_mle channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::mageck=0.5.9.5 diff --git a/modules/nf-core/mageck/test/environment.yml b/modules/nf-core/mageck/test/environment.yml index 1d056e5a392..fe99be19583 100644 --- a/modules/nf-core/mageck/test/environment.yml +++ b/modules/nf-core/mageck/test/environment.yml @@ -2,6 +2,5 @@ name: mageck_test channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::mageck=0.5.9.5 diff --git a/modules/nf-core/magus/align/environment.yml b/modules/nf-core/magus/align/environment.yml index 685f5a87840..5eb5626667d 100644 --- a/modules/nf-core/magus/align/environment.yml +++ b/modules/nf-core/magus/align/environment.yml @@ -2,7 +2,6 @@ name: magus_align channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::magus-msa=0.2.0 - conda-forge::pigz=2.8 diff --git a/modules/nf-core/magus/guidetree/environment.yml b/modules/nf-core/magus/guidetree/environment.yml index 8e7503342dc..15fe95a7b53 100644 --- a/modules/nf-core/magus/guidetree/environment.yml +++ b/modules/nf-core/magus/guidetree/environment.yml @@ -2,6 +2,5 @@ name: magus_guidetree channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::magus-msa=0.2.0 diff --git a/modules/nf-core/malt/build/environment.yml b/modules/nf-core/malt/build/environment.yml index a3b37a673bb..7f82e51adf7 100644 --- a/modules/nf-core/malt/build/environment.yml +++ b/modules/nf-core/malt/build/environment.yml @@ -2,6 +2,5 @@ name: malt_build channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::malt=0.61 diff --git a/modules/nf-core/malt/run/environment.yml b/modules/nf-core/malt/run/environment.yml index c53d7205682..69ea0b89c82 100644 --- a/modules/nf-core/malt/run/environment.yml +++ b/modules/nf-core/malt/run/environment.yml @@ -2,6 +2,5 @@ name: malt_run channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::malt=0.61 diff --git a/modules/nf-core/maltextract/environment.yml b/modules/nf-core/maltextract/environment.yml index f87a299c238..bf46eb6aaa3 100644 --- a/modules/nf-core/maltextract/environment.yml +++ b/modules/nf-core/maltextract/environment.yml @@ -2,6 +2,5 @@ name: maltextract channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::hops=0.35 diff --git a/modules/nf-core/manta/convertinversion/environment.yml b/modules/nf-core/manta/convertinversion/environment.yml index 433a423fa91..56d6cd1d641 100644 --- a/modules/nf-core/manta/convertinversion/environment.yml +++ b/modules/nf-core/manta/convertinversion/environment.yml @@ -2,7 +2,6 @@ name: manta_convertinversion channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::htslib=1.16 - bioconda::manta=1.6.0 diff --git a/modules/nf-core/manta/germline/environment.yml b/modules/nf-core/manta/germline/environment.yml index 4a63d3084b2..bba83532250 100644 --- a/modules/nf-core/manta/germline/environment.yml +++ b/modules/nf-core/manta/germline/environment.yml @@ -2,6 +2,5 @@ name: manta_germline channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::manta=1.6.0 diff --git a/modules/nf-core/manta/somatic/environment.yml b/modules/nf-core/manta/somatic/environment.yml index aac8827dfcb..cd12df70434 100644 --- a/modules/nf-core/manta/somatic/environment.yml +++ b/modules/nf-core/manta/somatic/environment.yml @@ -2,6 +2,5 @@ name: manta_somatic channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::manta=1.6.0 diff --git a/modules/nf-core/manta/tumoronly/environment.yml b/modules/nf-core/manta/tumoronly/environment.yml index cf5db361e00..7ad82afab84 100644 --- a/modules/nf-core/manta/tumoronly/environment.yml +++ b/modules/nf-core/manta/tumoronly/environment.yml @@ -2,6 +2,5 @@ name: manta_tumoronly channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::manta=1.6.0 diff --git a/modules/nf-core/mapad/index/environment.yml b/modules/nf-core/mapad/index/environment.yml index 20e36f6bba6..7a4cdd63aa2 100644 --- a/modules/nf-core/mapad/index/environment.yml +++ b/modules/nf-core/mapad/index/environment.yml @@ -2,6 +2,5 @@ name: mapad_index channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::mapad=0.43.0 diff --git a/modules/nf-core/mapad/map/environment.yml b/modules/nf-core/mapad/map/environment.yml index a6122ef5582..55a7d612277 100644 --- a/modules/nf-core/mapad/map/environment.yml +++ b/modules/nf-core/mapad/map/environment.yml @@ -2,6 +2,5 @@ name: mapad_map channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::mapad=0.43.0 diff --git a/modules/nf-core/mapdamage2/environment.yml b/modules/nf-core/mapdamage2/environment.yml index 92be8ef3ebe..c312ffbf52a 100644 --- a/modules/nf-core/mapdamage2/environment.yml +++ b/modules/nf-core/mapdamage2/environment.yml @@ -2,6 +2,5 @@ name: mapdamage2 channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::mapdamage2=2.2.1 diff --git a/modules/nf-core/mash/dist/environment.yml b/modules/nf-core/mash/dist/environment.yml index 34a5237d099..f68bbd52dca 100644 --- a/modules/nf-core/mash/dist/environment.yml +++ b/modules/nf-core/mash/dist/environment.yml @@ -2,6 +2,5 @@ name: mash_dist channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::mash=2.3 diff --git a/modules/nf-core/mash/screen/environment.yml b/modules/nf-core/mash/screen/environment.yml index d892dee5525..5e42b100be6 100644 --- a/modules/nf-core/mash/screen/environment.yml +++ b/modules/nf-core/mash/screen/environment.yml @@ -2,6 +2,5 @@ name: mash_screen channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::mash=2.3 diff --git a/modules/nf-core/mash/sketch/environment.yml b/modules/nf-core/mash/sketch/environment.yml index 968725ed3bd..62363b2d0c1 100644 --- a/modules/nf-core/mash/sketch/environment.yml +++ b/modules/nf-core/mash/sketch/environment.yml @@ -2,6 +2,5 @@ name: mash_sketch channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::mash=2.3 diff --git a/modules/nf-core/mashtree/environment.yml b/modules/nf-core/mashtree/environment.yml index 5bb235c7975..74633ea2d49 100644 --- a/modules/nf-core/mashtree/environment.yml +++ b/modules/nf-core/mashtree/environment.yml @@ -2,6 +2,5 @@ name: mashtree channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::mashtree=1.2.0 diff --git a/modules/nf-core/maxbin2/environment.yml b/modules/nf-core/maxbin2/environment.yml index 84066ce6516..2415520352e 100644 --- a/modules/nf-core/maxbin2/environment.yml +++ b/modules/nf-core/maxbin2/environment.yml @@ -2,6 +2,5 @@ name: maxbin2 channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::maxbin2=2.2.7 diff --git a/modules/nf-core/maxquant/lfq/environment.yml b/modules/nf-core/maxquant/lfq/environment.yml index 22c40f04c05..65449a1e070 100644 --- a/modules/nf-core/maxquant/lfq/environment.yml +++ b/modules/nf-core/maxquant/lfq/environment.yml @@ -2,6 +2,5 @@ name: maxquant_lfq channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::maxquant=2.0.3.0=py310hdfd78af_1 diff --git a/modules/nf-core/mcroni/environment.yml b/modules/nf-core/mcroni/environment.yml index 572bc527c7b..7f6936ed85b 100644 --- a/modules/nf-core/mcroni/environment.yml +++ b/modules/nf-core/mcroni/environment.yml @@ -2,6 +2,5 @@ name: mcroni channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::mcroni=1.0.4 diff --git a/modules/nf-core/md5sum/environment.yml b/modules/nf-core/md5sum/environment.yml index c196b0138a9..c5c3ee00768 100644 --- a/modules/nf-core/md5sum/environment.yml +++ b/modules/nf-core/md5sum/environment.yml @@ -2,6 +2,5 @@ name: md5sum channels: - conda-forge - bioconda - - defaults dependencies: - conda-forge::coreutils=8.30 diff --git a/modules/nf-core/medaka/environment.yml b/modules/nf-core/medaka/environment.yml index 20e2cbbed3e..29a4f4de70f 100644 --- a/modules/nf-core/medaka/environment.yml +++ b/modules/nf-core/medaka/environment.yml @@ -2,6 +2,5 @@ name: medaka channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::medaka=1.4.4 diff --git a/modules/nf-core/megahit/environment.yml b/modules/nf-core/megahit/environment.yml index aac2f99128a..9e5934104d5 100644 --- a/modules/nf-core/megahit/environment.yml +++ b/modules/nf-core/megahit/environment.yml @@ -2,7 +2,6 @@ name: megahit channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::megahit=1.2.9 - conda-forge::pigz=2.6 diff --git a/modules/nf-core/megan/daa2info/environment.yml b/modules/nf-core/megan/daa2info/environment.yml index 6b12a615430..2eb9cd2b69e 100644 --- a/modules/nf-core/megan/daa2info/environment.yml +++ b/modules/nf-core/megan/daa2info/environment.yml @@ -2,6 +2,5 @@ name: megan_daa2info channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::megan=6.21.7 diff --git a/modules/nf-core/megan/rma2info/environment.yml b/modules/nf-core/megan/rma2info/environment.yml index 28a3f6f8e55..d04a60344b2 100644 --- a/modules/nf-core/megan/rma2info/environment.yml +++ b/modules/nf-core/megan/rma2info/environment.yml @@ -2,6 +2,5 @@ name: megan_rma2info channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::megan=6.21.7 diff --git a/modules/nf-core/meningotype/environment.yml b/modules/nf-core/meningotype/environment.yml index 6e3dd5136e5..5bf7461e19d 100644 --- a/modules/nf-core/meningotype/environment.yml +++ b/modules/nf-core/meningotype/environment.yml @@ -2,6 +2,5 @@ name: meningotype channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::meningotype=0.8.5 diff --git a/modules/nf-core/merfin/hist/environment.yml b/modules/nf-core/merfin/hist/environment.yml index 6e420c7c83a..b1b59bcdc3a 100644 --- a/modules/nf-core/merfin/hist/environment.yml +++ b/modules/nf-core/merfin/hist/environment.yml @@ -4,6 +4,5 @@ name: "merfin_hist" channels: - conda-forge - bioconda - - defaults dependencies: - "bioconda::merfin=1.0" diff --git a/modules/nf-core/merqury/hapmers/environment.yml b/modules/nf-core/merqury/hapmers/environment.yml index 5f7977cd618..8ca223cf684 100644 --- a/modules/nf-core/merqury/hapmers/environment.yml +++ b/modules/nf-core/merqury/hapmers/environment.yml @@ -4,6 +4,5 @@ name: "merqury_hapmers" channels: - conda-forge - bioconda - - defaults dependencies: - "bioconda::merqury=1.3" diff --git a/modules/nf-core/merqury/merqury/environment.yml b/modules/nf-core/merqury/merqury/environment.yml index 722c47c1f20..54f2f565391 100644 --- a/modules/nf-core/merqury/merqury/environment.yml +++ b/modules/nf-core/merqury/merqury/environment.yml @@ -2,6 +2,5 @@ name: merqury_merqury channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::merqury=1.3 diff --git a/modules/nf-core/merquryfk/katcomp/environment.yml b/modules/nf-core/merquryfk/katcomp/environment.yml index 80174c19453..da0378d33b8 100644 --- a/modules/nf-core/merquryfk/katcomp/environment.yml +++ b/modules/nf-core/merquryfk/katcomp/environment.yml @@ -2,4 +2,3 @@ name: merquryfk_katcomp channels: - conda-forge - bioconda - - defaults diff --git a/modules/nf-core/merquryfk/katgc/environment.yml b/modules/nf-core/merquryfk/katgc/environment.yml index 4213934f418..25787eb86ee 100644 --- a/modules/nf-core/merquryfk/katgc/environment.yml +++ b/modules/nf-core/merquryfk/katgc/environment.yml @@ -2,4 +2,3 @@ name: merquryfk_katgc channels: - conda-forge - bioconda - - defaults diff --git a/modules/nf-core/merquryfk/merquryfk/environment.yml b/modules/nf-core/merquryfk/merquryfk/environment.yml index 44a5ee9bbf3..fa6cb1a07bb 100644 --- a/modules/nf-core/merquryfk/merquryfk/environment.yml +++ b/modules/nf-core/merquryfk/merquryfk/environment.yml @@ -2,4 +2,3 @@ name: merquryfk_merquryfk channels: - conda-forge - bioconda - - defaults diff --git a/modules/nf-core/meryl/count/environment.yml b/modules/nf-core/meryl/count/environment.yml index 808565ee796..b550fbd213e 100644 --- a/modules/nf-core/meryl/count/environment.yml +++ b/modules/nf-core/meryl/count/environment.yml @@ -2,6 +2,5 @@ name: meryl_count channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::meryl=1.4.1 diff --git a/modules/nf-core/meryl/histogram/environment.yml b/modules/nf-core/meryl/histogram/environment.yml index 09a324884da..f8f873b9859 100644 --- a/modules/nf-core/meryl/histogram/environment.yml +++ b/modules/nf-core/meryl/histogram/environment.yml @@ -2,6 +2,5 @@ name: meryl_histogram channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::meryl=1.4.1 diff --git a/modules/nf-core/meryl/unionsum/environment.yml b/modules/nf-core/meryl/unionsum/environment.yml index b8bdcbe8767..c426bc8e852 100644 --- a/modules/nf-core/meryl/unionsum/environment.yml +++ b/modules/nf-core/meryl/unionsum/environment.yml @@ -2,6 +2,5 @@ name: meryl_unionsum channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::meryl=1.4.1 diff --git a/modules/nf-core/metabat2/jgisummarizebamcontigdepths/environment.yml b/modules/nf-core/metabat2/jgisummarizebamcontigdepths/environment.yml index 3140be6a47b..887fc413fd6 100644 --- a/modules/nf-core/metabat2/jgisummarizebamcontigdepths/environment.yml +++ b/modules/nf-core/metabat2/jgisummarizebamcontigdepths/environment.yml @@ -2,6 +2,5 @@ name: metabat2_jgisummarizebamcontigdepths channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::metabat2=2.15 diff --git a/modules/nf-core/metabat2/metabat2/environment.yml b/modules/nf-core/metabat2/metabat2/environment.yml index 7ff056c096d..2f7139cd7a0 100644 --- a/modules/nf-core/metabat2/metabat2/environment.yml +++ b/modules/nf-core/metabat2/metabat2/environment.yml @@ -2,6 +2,5 @@ name: metabat2_metabat2 channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::metabat2=2.15 diff --git a/modules/nf-core/metaeuk/easypredict/environment.yml b/modules/nf-core/metaeuk/easypredict/environment.yml index f56445fe0ee..44530ab3a8c 100644 --- a/modules/nf-core/metaeuk/easypredict/environment.yml +++ b/modules/nf-core/metaeuk/easypredict/environment.yml @@ -2,6 +2,5 @@ name: metaeuk_easypredict channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::metaeuk=6.a5d39d9 diff --git a/modules/nf-core/metamaps/classify/environment.yml b/modules/nf-core/metamaps/classify/environment.yml index 3e66c559514..06152bff604 100644 --- a/modules/nf-core/metamaps/classify/environment.yml +++ b/modules/nf-core/metamaps/classify/environment.yml @@ -2,6 +2,5 @@ name: "metamaps_classify" channels: - conda-forge - bioconda - - defaults dependencies: - "bioconda::metamaps=0.1.633d2e0" diff --git a/modules/nf-core/metamaps/mapdirectly/environment.yml b/modules/nf-core/metamaps/mapdirectly/environment.yml index 19287be0aa3..32e1f505c5b 100644 --- a/modules/nf-core/metamaps/mapdirectly/environment.yml +++ b/modules/nf-core/metamaps/mapdirectly/environment.yml @@ -2,6 +2,5 @@ name: "metamaps_mapdirectly" channels: - conda-forge - bioconda - - defaults dependencies: - "bioconda::metamaps=0.1.633d2e0" diff --git a/modules/nf-core/metaphlan/makedb/environment.yml b/modules/nf-core/metaphlan/makedb/environment.yml index ae49a4ef298..d472f86cbf5 100644 --- a/modules/nf-core/metaphlan/makedb/environment.yml +++ b/modules/nf-core/metaphlan/makedb/environment.yml @@ -2,6 +2,5 @@ name: metaphlan_makedb channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::metaphlan=4.0.6 diff --git a/modules/nf-core/metaphlan/mergemetaphlantables/environment.yml b/modules/nf-core/metaphlan/mergemetaphlantables/environment.yml index 917e8c72d14..fbaeaa0879b 100644 --- a/modules/nf-core/metaphlan/mergemetaphlantables/environment.yml +++ b/modules/nf-core/metaphlan/mergemetaphlantables/environment.yml @@ -2,6 +2,5 @@ name: metaphlan_mergemetaphlantables channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::metaphlan=4.0.6 diff --git a/modules/nf-core/metaphlan/metaphlan/environment.yml b/modules/nf-core/metaphlan/metaphlan/environment.yml index 694b6f7f32a..6033290cda4 100644 --- a/modules/nf-core/metaphlan/metaphlan/environment.yml +++ b/modules/nf-core/metaphlan/metaphlan/environment.yml @@ -2,6 +2,5 @@ name: metaphlan_metaphlan channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::metaphlan=4.0.6 diff --git a/modules/nf-core/metaphlan3/mergemetaphlantables/environment.yml b/modules/nf-core/metaphlan3/mergemetaphlantables/environment.yml index 2ba8b925ad2..a0f6230cc02 100644 --- a/modules/nf-core/metaphlan3/mergemetaphlantables/environment.yml +++ b/modules/nf-core/metaphlan3/mergemetaphlantables/environment.yml @@ -2,6 +2,5 @@ name: metaphlan3_mergemetaphlantables channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::metaphlan=3.0.12 diff --git a/modules/nf-core/metaphlan3/metaphlan3/environment.yml b/modules/nf-core/metaphlan3/metaphlan3/environment.yml index 9c0b5674a73..088243de6fc 100644 --- a/modules/nf-core/metaphlan3/metaphlan3/environment.yml +++ b/modules/nf-core/metaphlan3/metaphlan3/environment.yml @@ -2,6 +2,5 @@ name: metaphlan3_metaphlan3 channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::metaphlan=3.0.12 diff --git a/modules/nf-core/methyldackel/extract/environment.yml b/modules/nf-core/methyldackel/extract/environment.yml index 03f1b0201f2..c8d18b336b0 100644 --- a/modules/nf-core/methyldackel/extract/environment.yml +++ b/modules/nf-core/methyldackel/extract/environment.yml @@ -2,6 +2,5 @@ name: methyldackel_extract channels: - conda-forge - bioconda - - defaults dependencies: - bioconda::methyldackel=0.6.0