diff --git a/modules/nf-core/agat/convertspgff2gtf/tests/main.nf.test b/modules/nf-core/agat/convertspgff2gtf/tests/main.nf.test
index 9accfecc147..401f4552ace 100644
--- a/modules/nf-core/agat/convertspgff2gtf/tests/main.nf.test
+++ b/modules/nf-core/agat/convertspgff2gtf/tests/main.nf.test
@@ -16,7 +16,7 @@ nextflow_process {
                 """
                 input[0] = [
                             [ id: 'test' ], // meta map
-                            file(params.test_data['sarscov2']['genome']['genome_gff3'], checkIfExists: true)
+                            file(params.modules_testdata_base_path + 'genomics/sarscov2/genome/genome.gff3', checkIfExists: true)
                 ]
                 """
             }
@@ -42,7 +42,7 @@ nextflow_process {
                 """
                 input[0] = [
                             [ id: 'test' ], // meta map
-                            file(params.test_data['sarscov2']['genome']['genome_gff3'], checkIfExists: true)
+                            file(params.modules_testdata_base_path + 'genomics/sarscov2/genome/genome.gff3', checkIfExists: true)
                 ]
                 """
             }
diff --git a/modules/nf-core/agat/convertspgff2tsv/tests/main.nf.test b/modules/nf-core/agat/convertspgff2tsv/tests/main.nf.test
index 4898a4a9bd1..6a2e8942e26 100644
--- a/modules/nf-core/agat/convertspgff2tsv/tests/main.nf.test
+++ b/modules/nf-core/agat/convertspgff2tsv/tests/main.nf.test
@@ -16,7 +16,7 @@ nextflow_process {
                 """
                 input[0] = [
                             [ id: 'test' ], // meta map
-                            file(params.test_data['sarscov2']['genome']['genome_gff3'], checkIfExists: true)
+                            file(params.modules_testdata_base_path + 'genomics/sarscov2/genome/genome.gff3', checkIfExists: true)
                 ]
                 """
             }
@@ -40,7 +40,7 @@ nextflow_process {
                 """
                 input[0] = [
                             [ id: 'test' ], // meta map
-                            file(params.test_data['sarscov2']['genome']['genome_gff3'], checkIfExists: true)
+                            file(params.modules_testdata_base_path + 'genomics/sarscov2/genome/genome.gff3', checkIfExists: true)
                 ]
                 """
             }
diff --git a/modules/nf-core/agat/convertspgxf2gxf/tests/main.nf.test b/modules/nf-core/agat/convertspgxf2gxf/tests/main.nf.test
index db8599196c9..d8d7bc2d1fb 100644
--- a/modules/nf-core/agat/convertspgxf2gxf/tests/main.nf.test
+++ b/modules/nf-core/agat/convertspgxf2gxf/tests/main.nf.test
@@ -16,7 +16,7 @@ nextflow_process {
                 """
                 input[0] = [
                             [ id: 'test' ], // meta map
-                            file(params.test_data['sarscov2']['genome']['genome_gtf'], checkIfExists: true)
+                            file(params.modules_testdata_base_path + 'genomics/sarscov2/genome/genome.gtf', checkIfExists: true)
                 ]
                 """
             }
@@ -42,7 +42,7 @@ nextflow_process {
                 """
                 input[0] = [
                             [ id: 'test' ], // meta map
-                            file(params.test_data['sarscov2']['genome']['genome_gtf'], checkIfExists: true)
+                            file(params.modules_testdata_base_path + 'genomics/sarscov2/genome/genome.gtf', checkIfExists: true)
                 ]
                 """
             }
diff --git a/modules/nf-core/agat/spaddintrons/tests/main.nf.test b/modules/nf-core/agat/spaddintrons/tests/main.nf.test
index d5c5c729f86..82d41932202 100644
--- a/modules/nf-core/agat/spaddintrons/tests/main.nf.test
+++ b/modules/nf-core/agat/spaddintrons/tests/main.nf.test
@@ -16,7 +16,7 @@ nextflow_process {
                 """
                 input[0] = [
                     [ id:'test' ],
-                    file(params.test_data['homo_sapiens']['genome']['genome_gtf'], checkIfExists: true)
+                    file(params.modules_testdata_base_path + 'genomics/homo_sapiens/genome/genome.gtf', checkIfExists: true)
                 ]
                 input[1] = []
                 """
@@ -41,7 +41,7 @@ nextflow_process {
                 """
                 input[0] = [
                     [ id:'test' ],
-                    file(params.test_data['homo_sapiens']['genome']['genome_gtf'], checkIfExists: true)
+                    file(params.modules_testdata_base_path + 'genomics/homo_sapiens/genome/genome.gtf', checkIfExists: true)
                 ]
                 input[1] = []
                 """
diff --git a/modules/nf-core/agat/spstatistics/tests/main.nf.test b/modules/nf-core/agat/spstatistics/tests/main.nf.test
index a15738a7a4a..ef867576850 100644
--- a/modules/nf-core/agat/spstatistics/tests/main.nf.test
+++ b/modules/nf-core/agat/spstatistics/tests/main.nf.test
@@ -16,7 +16,7 @@ nextflow_process {
                 """
                 input[0] = [
                             [ id: 'test' ], // meta map
-                            file(params.test_data['sarscov2']['genome']['genome_gff3'], checkIfExists: true)
+                            file(params.modules_testdata_base_path + 'genomics/sarscov2/genome/genome.gff3', checkIfExists: true)
                 ]
                 """
             }
@@ -40,7 +40,7 @@ nextflow_process {
                 """
                 input[0] = [
                             [ id: 'test' ], // meta map
-                            file(params.test_data['sarscov2']['genome']['genome_gff3'], checkIfExists: true)
+                            file(params.modules_testdata_base_path + 'genomics/sarscov2/genome/genome.gff3', checkIfExists: true)
                 ]
                 """
             }
diff --git a/modules/nf-core/agat/sqstatbasic/tests/main.nf.test b/modules/nf-core/agat/sqstatbasic/tests/main.nf.test
index f289188d417..4803f51ed6c 100644
--- a/modules/nf-core/agat/sqstatbasic/tests/main.nf.test
+++ b/modules/nf-core/agat/sqstatbasic/tests/main.nf.test
@@ -16,7 +16,7 @@ nextflow_process {
                 """
                 input[0] = [
                             [ id: 'test' ], // meta map
-                            file(params.test_data['sarscov2']['genome']['genome_gff3'], checkIfExists: true)
+                            file(params.modules_testdata_base_path + 'genomics/sarscov2/genome/genome.gff3', checkIfExists: true)
                 ]
                 """
             }
@@ -40,7 +40,7 @@ nextflow_process {
                 """
                 input[0] = [
                             [ id: 'test' ], // meta map
-                            file(params.test_data['sarscov2']['genome']['genome_gff3'], checkIfExists: true)
+                            file(params.modules_testdata_base_path + 'genomics/sarscov2/genome/genome.gff3', checkIfExists: true)
                 ]
                 """
             }
diff --git a/modules/nf-core/barrnap/tests/main.nf.test b/modules/nf-core/barrnap/tests/main.nf.test
index 5e60932015d..b2d62163209 100644
--- a/modules/nf-core/barrnap/tests/main.nf.test
+++ b/modules/nf-core/barrnap/tests/main.nf.test
@@ -14,7 +14,7 @@ nextflow_process {
                 """
                 input[0] = [
                                 [ id:'test', single_end:false ], // meta map
-                                file(params.test_data['sarscov2']['illumina']['contigs_fasta'], checkIfExists: true),
+                                file(params.modules_testdata_base_path + 'genomics/sarscov2/illumina/fasta/contigs.fasta', checkIfExists: true),
                                 "bac"
                             ]
                 """
@@ -38,7 +38,7 @@ nextflow_process {
                 """
                 input[0] = [
                                 [ id:'test', single_end:false ], // meta map
-                                file(params.test_data['sarscov2']['illumina']['contigs_fasta'], checkIfExists: true),
+                                file(params.modules_testdata_base_path + 'genomics/sarscov2/illumina/fasta/contigs.fasta', checkIfExists: true),
                                 "bac"
                             ]
                 """
diff --git a/modules/nf-core/smoove/call/tests/main.nf.test b/modules/nf-core/smoove/call/tests/main.nf.test
index 5fd90aacace..df9d3c1ddb2 100644
--- a/modules/nf-core/smoove/call/tests/main.nf.test
+++ b/modules/nf-core/smoove/call/tests/main.nf.test
@@ -16,12 +16,12 @@ nextflow_process {
                 """
                 input[0] = Channel.of([
                     [ id:'test' ], // meta map
-                    file(params.test_data['homo_sapiens']['illumina']['test_paired_end_sorted_bam'], checkIfExists: true),
-                    file(params.test_data['homo_sapiens']['illumina']['test_paired_end_sorted_bam_bai'], checkIfExists: true),
+                    file(params.modules_testdata_base_path + 'genomics/homo_sapiens/illumina/bam/test.paired_end.sorted.bam', checkIfExists: true),
+                    file(params.modules_testdata_base_path + 'genomics/homo_sapiens/illumina/bam/test.paired_end.sorted.bam.bai', checkIfExists: true),
                     []
                 ])
-                input[1] = [[id:"fasta"], file(params.test_data['homo_sapiens']['genome']['genome_fasta'], checkIfExists: true)]
-                input[2] = [[id:"fai"], file(params.test_data['homo_sapiens']['genome']['genome_fasta_fai'], checkIfExists: true)]
+                input[1] = [[id:"fasta"], file(params.modules_testdata_base_path + 'genomics/homo_sapiens/genome/genome.fasta', checkIfExists: true)]
+                input[2] = [[id:"fai"], file(params.modules_testdata_base_path + 'genomics/homo_sapiens/genome/genome.fasta.fai', checkIfExists: true)]
                 """
             }
         }
@@ -42,12 +42,12 @@ nextflow_process {
                 """
                 input[0] = Channel.of([
                     [ id:'test' ], // meta map
-                    file(params.test_data['homo_sapiens']['illumina']['test_paired_end_sorted_cram'], checkIfExists: true),
-                    file(params.test_data['homo_sapiens']['illumina']['test_paired_end_sorted_cram_crai'], checkIfExists: true),
-                    file(params.test_data['homo_sapiens']['genome']['genome_bed'], checkIfExists: true)
+                    file(params.modules_testdata_base_path + 'genomics/homo_sapiens/illumina/cram/test.paired_end.sorted.cram', checkIfExists: true),
+                    file(params.modules_testdata_base_path + 'genomics/homo_sapiens/illumina/cram/test.paired_end.sorted.cram.crai', checkIfExists: true),
+                    file(params.modules_testdata_base_path + 'genomics/homo_sapiens/genome/genome.bed', checkIfExists: true)
                 ])
-                input[1] = [[id:"fasta"], file(params.test_data['homo_sapiens']['genome']['genome_fasta'], checkIfExists: true)]
-                input[2] = [[id:"fai"], file(params.test_data['homo_sapiens']['genome']['genome_fasta_fai'], checkIfExists: true)]
+                input[1] = [[id:"fasta"], file(params.modules_testdata_base_path + 'genomics/homo_sapiens/genome/genome.fasta', checkIfExists: true)]
+                input[2] = [[id:"fai"], file(params.modules_testdata_base_path + 'genomics/homo_sapiens/genome/genome.fasta.fai', checkIfExists: true)]
                 """
             }
         }
@@ -70,12 +70,12 @@ nextflow_process {
                 """
                 input[0] = Channel.of([
                     [ id:'test' ], // meta map
-                    file(params.test_data['homo_sapiens']['illumina']['test_paired_end_sorted_bam'], checkIfExists: true),
-                    file(params.test_data['homo_sapiens']['illumina']['test_paired_end_sorted_bam_bai'], checkIfExists: true),
+                    file(params.modules_testdata_base_path + 'genomics/homo_sapiens/illumina/bam/test.paired_end.sorted.bam', checkIfExists: true),
+                    file(params.modules_testdata_base_path + 'genomics/homo_sapiens/illumina/bam/test.paired_end.sorted.bam.bai', checkIfExists: true),
                     []
                 ])
-                input[1] = [[id:"fasta"], file(params.test_data['homo_sapiens']['genome']['genome_fasta'], checkIfExists: true)]
-                input[2] = [[id:"fai"], file(params.test_data['homo_sapiens']['genome']['genome_fasta_fai'], checkIfExists: true)]
+                input[1] = [[id:"fasta"], file(params.modules_testdata_base_path + 'genomics/homo_sapiens/genome/genome.fasta', checkIfExists: true)]
+                input[2] = [[id:"fai"], file(params.modules_testdata_base_path + 'genomics/homo_sapiens/genome/genome.fasta.fai', checkIfExists: true)]
                 """
             }
         }