diff --git a/modules/nf-core/custom/dumpsoftwareversions/environment.yml b/modules/nf-core/custom/dumpsoftwareversions/environment.yml index 9d79af93928..f1cd99b0792 100644 --- a/modules/nf-core/custom/dumpsoftwareversions/environment.yml +++ b/modules/nf-core/custom/dumpsoftwareversions/environment.yml @@ -2,4 +2,4 @@ channels: - conda-forge - bioconda dependencies: - - bioconda::multiqc=1.20 + - bioconda::multiqc=1.24.1 diff --git a/modules/nf-core/custom/dumpsoftwareversions/main.nf b/modules/nf-core/custom/dumpsoftwareversions/main.nf index 105f9265a8d..65c3c59fcbd 100644 --- a/modules/nf-core/custom/dumpsoftwareversions/main.nf +++ b/modules/nf-core/custom/dumpsoftwareversions/main.nf @@ -1,11 +1,19 @@ +def deprecation_message = """ +WARNING: This module has been deprecated. + +Reason: +This module is no longer recommended for use, as it is replaced by the function softwareVersionsToYAML +in the utils_nfcore_pipeline subworkflow that is included in the nf-core template. + +""" process CUSTOM_DUMPSOFTWAREVERSIONS { label 'process_single' // Requires `pyyaml` which does not have a dedicated container but is in the MultiQC container conda "${moduleDir}/environment.yml" container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? - 'https://depot.galaxyproject.org/singularity/multiqc:1.20--pyhdfd78af_0' : - 'biocontainers/multiqc:1.20--pyhdfd78af_0' }" + 'https://depot.galaxyproject.org/singularity/multiqc:1.24.1--pyhdfd78af_0' : + 'biocontainers/multiqc:1.24.1--pyhdfd78af_0' }" input: path versions @@ -19,6 +27,7 @@ process CUSTOM_DUMPSOFTWAREVERSIONS { task.ext.when == null || task.ext.when script: + assert true: deprecation_message def args = task.ext.args ?: '' template 'dumpsoftwareversions.py' }