diff --git a/modules/nf-core/last/dotplot/environment.yml b/modules/nf-core/last/dotplot/environment.yml index b013d4d8b0e..064a3a459da 100644 --- a/modules/nf-core/last/dotplot/environment.yml +++ b/modules/nf-core/last/dotplot/environment.yml @@ -6,4 +6,4 @@ channels: - bioconda - defaults dependencies: - - "bioconda::last=1542" + - "bioconda::last=1571" diff --git a/modules/nf-core/last/dotplot/main.nf b/modules/nf-core/last/dotplot/main.nf index 93f311d87cf..1ac3c9ff980 100644 --- a/modules/nf-core/last/dotplot/main.nf +++ b/modules/nf-core/last/dotplot/main.nf @@ -4,8 +4,8 @@ process LAST_DOTPLOT { conda "${moduleDir}/environment.yml" container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? - 'https://depot.galaxyproject.org/singularity/last:1542--h43eeafb_1' : - 'biocontainers/last:1542--h43eeafb_1' }" + 'https://depot.galaxyproject.org/singularity/last:1571--h43eeafb_0' : + 'biocontainers/last:1571--h43eeafb_0' }" input: tuple val(meta), path(maf), path(annot_b) diff --git a/modules/nf-core/last/dotplot/tests/main.nf.test.snap b/modules/nf-core/last/dotplot/tests/main.nf.test.snap index cff5b566404..41b3b7e92f7 100644 --- a/modules/nf-core/last/dotplot/tests/main.nf.test.snap +++ b/modules/nf-core/last/dotplot/tests/main.nf.test.snap @@ -2,37 +2,37 @@ "sarscov2 - contigs - genome - gif": { "content": [ [ - "versions.yml:md5,8a86fe4a0227c77ecfcc0aa21a3ece07" + "versions.yml:md5,2b5085f9eec6d9623d34b918b66ffe58" ] ], "meta": { "nf-test": "0.8.4", - "nextflow": "24.04.2" + "nextflow": "24.04.4" }, - "timestamp": "2024-06-27T09:19:30.116358" + "timestamp": "2024-08-26T15:39:30.517622" }, "sarscov2 - contigs - genome - png - stub": { "content": [ [ - "versions.yml:md5,8a86fe4a0227c77ecfcc0aa21a3ece07" + "versions.yml:md5,2b5085f9eec6d9623d34b918b66ffe58" ] ], "meta": { "nf-test": "0.8.4", - "nextflow": "24.04.2" + "nextflow": "24.04.4" }, - "timestamp": "2024-06-27T09:19:46.588825" + "timestamp": "2024-08-26T15:39:46.73375" }, "sarscov2 - contigs - genome - png": { "content": [ [ - "versions.yml:md5,8a86fe4a0227c77ecfcc0aa21a3ece07" + "versions.yml:md5,2b5085f9eec6d9623d34b918b66ffe58" ] ], "meta": { "nf-test": "0.8.4", - "nextflow": "24.04.2" + "nextflow": "24.04.4" }, - "timestamp": "2024-06-27T09:19:08.959252" + "timestamp": "2024-08-26T15:39:14.058511" } } \ No newline at end of file diff --git a/modules/nf-core/last/lastal/environment.yml b/modules/nf-core/last/lastal/environment.yml index c3a87c68c1f..49f3e794c0c 100644 --- a/modules/nf-core/last/lastal/environment.yml +++ b/modules/nf-core/last/lastal/environment.yml @@ -6,4 +6,4 @@ channels: - bioconda - defaults dependencies: - - "bioconda::last=1542" + - "bioconda::last=1571" diff --git a/modules/nf-core/last/lastal/main.nf b/modules/nf-core/last/lastal/main.nf index 560ada11b32..470e87ccf1e 100644 --- a/modules/nf-core/last/lastal/main.nf +++ b/modules/nf-core/last/lastal/main.nf @@ -4,8 +4,8 @@ process LAST_LASTAL { conda "${moduleDir}/environment.yml" container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? - 'https://depot.galaxyproject.org/singularity/last:1542--h43eeafb_1' : - 'biocontainers/last:1542--h43eeafb_1' }" + 'https://depot.galaxyproject.org/singularity/last:1571--h43eeafb_0' : + 'biocontainers/last:1571--h43eeafb_0' }" input: tuple val(meta), path(fastx), path (param_file) diff --git a/modules/nf-core/last/lastal/tests/main.nf.test.snap b/modules/nf-core/last/lastal/tests/main.nf.test.snap index 9245a96252e..d9a09c9aef6 100644 --- a/modules/nf-core/last/lastal/tests/main.nf.test.snap +++ b/modules/nf-core/last/lastal/tests/main.nf.test.snap @@ -8,7 +8,7 @@ "id": "contigs", "single_end": false }, - "contigs.maf.gz:md5,902274b72657f62d270d284dc211aa7f" + "contigs.maf.gz:md5,dd02b4855c49bb3d46106177f5a08955" ] ], "1": [ @@ -21,7 +21,7 @@ ] ], "2": [ - "versions.yml:md5,e0a425d7cbca674252a1e4328b247ca2" + "versions.yml:md5,12f5da2547baed9f5b15b31b1cd22951" ], "maf": [ [ @@ -29,7 +29,7 @@ "id": "contigs", "single_end": false }, - "contigs.maf.gz:md5,902274b72657f62d270d284dc211aa7f" + "contigs.maf.gz:md5,dd02b4855c49bb3d46106177f5a08955" ] ], "multiqc": [ @@ -42,15 +42,15 @@ ] ], "versions": [ - "versions.yml:md5,e0a425d7cbca674252a1e4328b247ca2" + "versions.yml:md5,12f5da2547baed9f5b15b31b1cd22951" ] } ], "meta": { "nf-test": "0.8.4", - "nextflow": "24.04.2" + "nextflow": "24.04.4" }, - "timestamp": "2024-07-02T17:57:48.589408" + "timestamp": "2024-08-26T15:23:20.411461" }, "sarscov2 - contigs - genome - stub": { "content": [ @@ -74,7 +74,7 @@ ] ], "2": [ - "versions.yml:md5,e0a425d7cbca674252a1e4328b247ca2" + "versions.yml:md5,12f5da2547baed9f5b15b31b1cd22951" ], "maf": [ [ @@ -95,15 +95,15 @@ ] ], "versions": [ - "versions.yml:md5,e0a425d7cbca674252a1e4328b247ca2" + "versions.yml:md5,12f5da2547baed9f5b15b31b1cd22951" ] } ], "meta": { "nf-test": "0.8.4", - "nextflow": "24.04.2" + "nextflow": "24.04.4" }, - "timestamp": "2024-07-02T17:58:30.521811" + "timestamp": "2024-08-26T15:24:03.533878" }, "sarscov2 - contigs - genome - withparams": { "content": [ @@ -114,7 +114,7 @@ "id": "contigs", "single_end": false }, - "contigs.maf.gz:md5,8cb97b6daa34dbf9c723a2c4a984992d" + "contigs.maf.gz:md5,8e4058c39c8ea92da0fa063398b6346d" ] ], "1": [ @@ -127,7 +127,7 @@ ] ], "2": [ - "versions.yml:md5,e0a425d7cbca674252a1e4328b247ca2" + "versions.yml:md5,12f5da2547baed9f5b15b31b1cd22951" ], "maf": [ [ @@ -135,7 +135,7 @@ "id": "contigs", "single_end": false }, - "contigs.maf.gz:md5,8cb97b6daa34dbf9c723a2c4a984992d" + "contigs.maf.gz:md5,8e4058c39c8ea92da0fa063398b6346d" ] ], "multiqc": [ @@ -148,14 +148,14 @@ ] ], "versions": [ - "versions.yml:md5,e0a425d7cbca674252a1e4328b247ca2" + "versions.yml:md5,12f5da2547baed9f5b15b31b1cd22951" ] } ], "meta": { "nf-test": "0.8.4", - "nextflow": "24.04.2" + "nextflow": "24.04.4" }, - "timestamp": "2024-07-02T17:58:09.677672" + "timestamp": "2024-08-26T15:23:42.107503" } } \ No newline at end of file diff --git a/modules/nf-core/last/lastdb/environment.yml b/modules/nf-core/last/lastdb/environment.yml index 9e98a10ae20..e8249083e74 100644 --- a/modules/nf-core/last/lastdb/environment.yml +++ b/modules/nf-core/last/lastdb/environment.yml @@ -6,4 +6,4 @@ channels: - bioconda - defaults dependencies: - - "bioconda::last=1542" + - "bioconda::last=1571" diff --git a/modules/nf-core/last/lastdb/main.nf b/modules/nf-core/last/lastdb/main.nf index 856b3643c77..916838450ae 100644 --- a/modules/nf-core/last/lastdb/main.nf +++ b/modules/nf-core/last/lastdb/main.nf @@ -4,8 +4,8 @@ process LAST_LASTDB { conda "${moduleDir}/environment.yml" container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? - 'https://depot.galaxyproject.org/singularity/last:1542--h43eeafb_1' : - 'biocontainers/last:1542--h43eeafb_1' }" + 'https://depot.galaxyproject.org/singularity/last:1571--h43eeafb_0' : + 'biocontainers/last:1571--h43eeafb_0' }" input: tuple val(meta), path(fastx) diff --git a/modules/nf-core/last/lastdb/tests/main.nf.test.snap b/modules/nf-core/last/lastdb/tests/main.nf.test.snap index ee2a1130338..3ff3212f6f8 100644 --- a/modules/nf-core/last/lastdb/tests/main.nf.test.snap +++ b/modules/nf-core/last/lastdb/tests/main.nf.test.snap @@ -19,7 +19,7 @@ ] ], "1": [ - "versions.yml:md5,c7fa6cfa252a61c600a73d6341d47557" + "versions.yml:md5,00a5bd5d4a9df81b83a6279cecb34701" ], "index": [ [ @@ -38,15 +38,15 @@ ] ], "versions": [ - "versions.yml:md5,c7fa6cfa252a61c600a73d6341d47557" + "versions.yml:md5,00a5bd5d4a9df81b83a6279cecb34701" ] } ], "meta": { "nf-test": "0.8.4", - "nextflow": "24.04.2" + "nextflow": "24.04.4" }, - "timestamp": "2024-06-06T16:42:08.735561" + "timestamp": "2024-08-26T15:34:34.647102" }, "sarscov2 - fastq gzipped": { "content": [ @@ -59,7 +59,7 @@ [ "test.bck:md5,05b14d8ac418b3193d9cc921086cea05", "test.des:md5,26ab49015cc572172b9efa50fc5190bc", - "test.prj:md5,b50003077b7c7357fb8bacdf6f87653d", + "test.prj:md5,e668d4ee5fb0c2e9c82bd4a2fc3e7998", "test.sds:md5,d3deb4c985081c9f5ad6684d405bd20b", "test.ssp:md5,5c17139a9022b0cb97f007146fa1c6da", "test.suf:md5,9ac359afa86a8964d81a87a1d4f05ef0", @@ -68,7 +68,7 @@ ] ], "1": [ - "versions.yml:md5,c7fa6cfa252a61c600a73d6341d47557" + "versions.yml:md5,00a5bd5d4a9df81b83a6279cecb34701" ], "index": [ [ @@ -78,7 +78,7 @@ [ "test.bck:md5,05b14d8ac418b3193d9cc921086cea05", "test.des:md5,26ab49015cc572172b9efa50fc5190bc", - "test.prj:md5,b50003077b7c7357fb8bacdf6f87653d", + "test.prj:md5,e668d4ee5fb0c2e9c82bd4a2fc3e7998", "test.sds:md5,d3deb4c985081c9f5ad6684d405bd20b", "test.ssp:md5,5c17139a9022b0cb97f007146fa1c6da", "test.suf:md5,9ac359afa86a8964d81a87a1d4f05ef0", @@ -87,15 +87,15 @@ ] ], "versions": [ - "versions.yml:md5,c7fa6cfa252a61c600a73d6341d47557" + "versions.yml:md5,00a5bd5d4a9df81b83a6279cecb34701" ] } ], "meta": { "nf-test": "0.8.4", - "nextflow": "24.04.2" + "nextflow": "24.04.4" }, - "timestamp": "2024-06-06T16:41:07.4512" + "timestamp": "2024-08-26T15:34:18.336299" }, "sarscov2 - fasta": { "content": [ @@ -108,7 +108,7 @@ [ "test.bck:md5,157526d333b88523cb15ac4efe00738f", "test.des:md5,3a9ea6d336e113a74d7fdca5e7b623fc", - "test.prj:md5,b937b1565cb4c983c8fcd3780d3e151e", + "test.prj:md5,f7e7445a3ff008efe127ca841f59fe9c", "test.sds:md5,e7729db27ac7a5a109c9d48cfcdc9015", "test.ssp:md5,53524efdea3d8989201419a29e81ec1f", "test.suf:md5,ef7482260705bb8146acbbbdce6c0068", @@ -117,7 +117,7 @@ ] ], "1": [ - "versions.yml:md5,c7fa6cfa252a61c600a73d6341d47557" + "versions.yml:md5,00a5bd5d4a9df81b83a6279cecb34701" ], "index": [ [ @@ -127,7 +127,7 @@ [ "test.bck:md5,157526d333b88523cb15ac4efe00738f", "test.des:md5,3a9ea6d336e113a74d7fdca5e7b623fc", - "test.prj:md5,b937b1565cb4c983c8fcd3780d3e151e", + "test.prj:md5,f7e7445a3ff008efe127ca841f59fe9c", "test.sds:md5,e7729db27ac7a5a109c9d48cfcdc9015", "test.ssp:md5,53524efdea3d8989201419a29e81ec1f", "test.suf:md5,ef7482260705bb8146acbbbdce6c0068", @@ -136,14 +136,14 @@ ] ], "versions": [ - "versions.yml:md5,c7fa6cfa252a61c600a73d6341d47557" + "versions.yml:md5,00a5bd5d4a9df81b83a6279cecb34701" ] } ], "meta": { "nf-test": "0.8.4", - "nextflow": "24.04.2" + "nextflow": "24.04.4" }, - "timestamp": "2024-06-06T16:40:05.874954" + "timestamp": "2024-08-26T15:34:01.800286" } } \ No newline at end of file diff --git a/modules/nf-core/last/mafconvert/environment.yml b/modules/nf-core/last/mafconvert/environment.yml index 009cb82f4ac..9aea0cbe6ee 100644 --- a/modules/nf-core/last/mafconvert/environment.yml +++ b/modules/nf-core/last/mafconvert/environment.yml @@ -6,4 +6,4 @@ channels: - bioconda - defaults dependencies: - - "bioconda::last=1542" + - "bioconda::last=1571" diff --git a/modules/nf-core/last/mafconvert/main.nf b/modules/nf-core/last/mafconvert/main.nf index 3bed0600bf8..bbe6c75d9a6 100644 --- a/modules/nf-core/last/mafconvert/main.nf +++ b/modules/nf-core/last/mafconvert/main.nf @@ -4,8 +4,8 @@ process LAST_MAFCONVERT { conda "${moduleDir}/environment.yml" container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? - 'https://depot.galaxyproject.org/singularity/last:1542--h43eeafb_1' : - 'biocontainers/last:1542--h43eeafb_1' }" + 'https://depot.galaxyproject.org/singularity/last:1571--h43eeafb_0' : + 'biocontainers/last:1571--h43eeafb_0' }" input: tuple val(meta), path(maf) diff --git a/modules/nf-core/last/mafconvert/tests/main.nf.test.snap b/modules/nf-core/last/mafconvert/tests/main.nf.test.snap index 3693b980836..f1c41c08189 100644 --- a/modules/nf-core/last/mafconvert/tests/main.nf.test.snap +++ b/modules/nf-core/last/mafconvert/tests/main.nf.test.snap @@ -35,7 +35,7 @@ ], "9": [ - "versions.yml:md5,d759c732b33af95ef94f98c01fcc041b" + "versions.yml:md5,4e515249c766dcf398f517bb837adce5" ], "axt_gz": [ @@ -70,15 +70,15 @@ ], "versions": [ - "versions.yml:md5,d759c732b33af95ef94f98c01fcc041b" + "versions.yml:md5,4e515249c766dcf398f517bb837adce5" ] } ], "meta": { "nf-test": "0.8.4", - "nextflow": "24.04.2" + "nextflow": "24.04.4" }, - "timestamp": "2024-06-06T18:12:33.604233" + "timestamp": "2024-08-26T15:26:55.89707" }, "sarscov2 - bam": { "content": [ @@ -116,7 +116,7 @@ ], "9": [ - "versions.yml:md5,d759c732b33af95ef94f98c01fcc041b" + "versions.yml:md5,4e515249c766dcf398f517bb837adce5" ], "axt_gz": [ @@ -151,14 +151,14 @@ ], "versions": [ - "versions.yml:md5,d759c732b33af95ef94f98c01fcc041b" + "versions.yml:md5,4e515249c766dcf398f517bb837adce5" ] } ], "meta": { "nf-test": "0.8.4", - "nextflow": "24.04.2" + "nextflow": "24.04.4" }, - "timestamp": "2024-06-06T18:11:32.396233" + "timestamp": "2024-08-26T15:26:39.429173" } } \ No newline at end of file diff --git a/modules/nf-core/last/mafswap/environment.yml b/modules/nf-core/last/mafswap/environment.yml index cc112af83d4..15e3c6b8ba5 100644 --- a/modules/nf-core/last/mafswap/environment.yml +++ b/modules/nf-core/last/mafswap/environment.yml @@ -6,4 +6,4 @@ channels: - bioconda - defaults dependencies: - - "bioconda::last=1542" + - "bioconda::last=1571" diff --git a/modules/nf-core/last/mafswap/main.nf b/modules/nf-core/last/mafswap/main.nf index 875a6af3498..4dadf391ff4 100644 --- a/modules/nf-core/last/mafswap/main.nf +++ b/modules/nf-core/last/mafswap/main.nf @@ -4,8 +4,8 @@ process LAST_MAFSWAP { conda "${moduleDir}/environment.yml" container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? - 'https://depot.galaxyproject.org/singularity/last:1542--h43eeafb_1' : - 'biocontainers/last:1542--h43eeafb_1' }" + 'https://depot.galaxyproject.org/singularity/last:1571--h43eeafb_0' : + 'biocontainers/last:1571--h43eeafb_0' }" input: tuple val(meta), path(maf) diff --git a/modules/nf-core/last/mafswap/tests/main.nf.test.snap b/modules/nf-core/last/mafswap/tests/main.nf.test.snap index cc085dffe1b..5c41a422a0b 100644 --- a/modules/nf-core/last/mafswap/tests/main.nf.test.snap +++ b/modules/nf-core/last/mafswap/tests/main.nf.test.snap @@ -11,7 +11,7 @@ ] ], "1": [ - "versions.yml:md5,9819f8873c15cc665cbee998cefb72dd" + "versions.yml:md5,1a6fc970e6952d90c3b560162af8fb1f" ], "maf": [ [ @@ -22,15 +22,15 @@ ] ], "versions": [ - "versions.yml:md5,9819f8873c15cc665cbee998cefb72dd" + "versions.yml:md5,1a6fc970e6952d90c3b560162af8fb1f" ] } ], "meta": { "nf-test": "0.8.4", - "nextflow": "24.04.2" + "nextflow": "24.04.4" }, - "timestamp": "2024-06-04T17:59:43.47396" + "timestamp": "2024-08-26T15:31:41.694631" }, "sarscov2 - contigs - genome - stub": { "content": [ @@ -44,7 +44,7 @@ ] ], "1": [ - "versions.yml:md5,9819f8873c15cc665cbee998cefb72dd" + "versions.yml:md5,1a6fc970e6952d90c3b560162af8fb1f" ], "maf": [ [ @@ -55,14 +55,14 @@ ] ], "versions": [ - "versions.yml:md5,9819f8873c15cc665cbee998cefb72dd" + "versions.yml:md5,1a6fc970e6952d90c3b560162af8fb1f" ] } ], "meta": { "nf-test": "0.8.4", - "nextflow": "24.04.2" + "nextflow": "24.04.4" }, - "timestamp": "2024-06-06T19:41:29.891962" + "timestamp": "2024-08-26T15:31:58.257208" } } \ No newline at end of file diff --git a/modules/nf-core/last/postmask/environment.yml b/modules/nf-core/last/postmask/environment.yml index 75ee281150d..899e8fee491 100644 --- a/modules/nf-core/last/postmask/environment.yml +++ b/modules/nf-core/last/postmask/environment.yml @@ -6,4 +6,4 @@ channels: - bioconda - defaults dependencies: - - "bioconda::last=1542" + - "bioconda::last=1571" diff --git a/modules/nf-core/last/postmask/main.nf b/modules/nf-core/last/postmask/main.nf index ed2b5f0c060..e9ff4878fde 100644 --- a/modules/nf-core/last/postmask/main.nf +++ b/modules/nf-core/last/postmask/main.nf @@ -4,8 +4,8 @@ process LAST_POSTMASK { conda "${moduleDir}/environment.yml" container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? - 'https://depot.galaxyproject.org/singularity/last:1542--h43eeafb_1' : - 'biocontainers/last:1542--h43eeafb_1' }" + 'https://depot.galaxyproject.org/singularity/last:1571--h43eeafb_0' : + 'biocontainers/last:1571--h43eeafb_0' }" input: tuple val(meta), path(maf) diff --git a/modules/nf-core/last/postmask/tests/main.nf.test.snap b/modules/nf-core/last/postmask/tests/main.nf.test.snap index 3d924744615..3af5efbc4b8 100644 --- a/modules/nf-core/last/postmask/tests/main.nf.test.snap +++ b/modules/nf-core/last/postmask/tests/main.nf.test.snap @@ -11,7 +11,7 @@ ] ], "1": [ - "versions.yml:md5,5bfe6a9059961e1533daf7a021899249" + "versions.yml:md5,d1f6eee514bd694a0aeead8ee815a19e" ], "maf": [ [ @@ -22,15 +22,15 @@ ] ], "versions": [ - "versions.yml:md5,5bfe6a9059961e1533daf7a021899249" + "versions.yml:md5,d1f6eee514bd694a0aeead8ee815a19e" ] } ], "meta": { "nf-test": "0.8.4", - "nextflow": "24.04.2" + "nextflow": "24.04.4" }, - "timestamp": "2024-06-03T15:21:37.870786" + "timestamp": "2024-08-26T15:36:54.898194" }, "sarscov2 - contigs - genome - stub": { "content": [ @@ -44,7 +44,7 @@ ] ], "1": [ - "versions.yml:md5,5bfe6a9059961e1533daf7a021899249" + "versions.yml:md5,d1f6eee514bd694a0aeead8ee815a19e" ], "maf": [ [ @@ -55,14 +55,14 @@ ] ], "versions": [ - "versions.yml:md5,5bfe6a9059961e1533daf7a021899249" + "versions.yml:md5,d1f6eee514bd694a0aeead8ee815a19e" ] } ], "meta": { "nf-test": "0.8.4", - "nextflow": "24.04.2" + "nextflow": "24.04.4" }, - "timestamp": "2024-06-06T19:55:47.691726" + "timestamp": "2024-08-26T15:37:11.363434" } } \ No newline at end of file diff --git a/modules/nf-core/last/split/environment.yml b/modules/nf-core/last/split/environment.yml index 7d76b55fca1..c4608dd218c 100644 --- a/modules/nf-core/last/split/environment.yml +++ b/modules/nf-core/last/split/environment.yml @@ -6,4 +6,4 @@ channels: - bioconda - defaults dependencies: - - "bioconda::last=1542" + - "bioconda::last=1571" diff --git a/modules/nf-core/last/split/main.nf b/modules/nf-core/last/split/main.nf index 410d16f1d27..9fcf3588d57 100644 --- a/modules/nf-core/last/split/main.nf +++ b/modules/nf-core/last/split/main.nf @@ -4,8 +4,8 @@ process LAST_SPLIT { conda "${moduleDir}/environment.yml" container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? - 'https://depot.galaxyproject.org/singularity/last:1542--h43eeafb_1' : - 'biocontainers/last:1542--h43eeafb_1' }" + 'https://depot.galaxyproject.org/singularity/last:1571--h43eeafb_0' : + 'biocontainers/last:1571--h43eeafb_0' }" input: tuple val(meta), path(maf) diff --git a/modules/nf-core/last/split/tests/main.nf.test.snap b/modules/nf-core/last/split/tests/main.nf.test.snap index 953a6542a80..603f9263f5a 100644 --- a/modules/nf-core/last/split/tests/main.nf.test.snap +++ b/modules/nf-core/last/split/tests/main.nf.test.snap @@ -19,7 +19,7 @@ ] ], "2": [ - "versions.yml:md5,9e429d0800988ae0bbe5000827d34ad1" + "versions.yml:md5,8b705a62c76f7753a51d3d387cf458f1" ], "maf": [ [ @@ -38,15 +38,15 @@ ] ], "versions": [ - "versions.yml:md5,9e429d0800988ae0bbe5000827d34ad1" + "versions.yml:md5,8b705a62c76f7753a51d3d387cf458f1" ] } ], "meta": { "nf-test": "0.8.4", - "nextflow": "24.04.2" + "nextflow": "24.04.4" }, - "timestamp": "2024-07-02T11:45:00.535348" + "timestamp": "2024-08-26T15:20:43.307807" }, "sarscov2 - contigs_genome - stub": { "content": [ @@ -68,7 +68,7 @@ ] ], "2": [ - "versions.yml:md5,9e429d0800988ae0bbe5000827d34ad1" + "versions.yml:md5,8b705a62c76f7753a51d3d387cf458f1" ], "maf": [ [ @@ -87,14 +87,14 @@ ] ], "versions": [ - "versions.yml:md5,9e429d0800988ae0bbe5000827d34ad1" + "versions.yml:md5,8b705a62c76f7753a51d3d387cf458f1" ] } ], "meta": { "nf-test": "0.8.4", - "nextflow": "24.04.2" + "nextflow": "24.04.4" }, - "timestamp": "2024-07-02T11:45:21.243325" + "timestamp": "2024-08-26T15:20:59.963034" } } \ No newline at end of file diff --git a/modules/nf-core/last/train/environment.yml b/modules/nf-core/last/train/environment.yml index 5edaf64fdfc..1a59871b7a5 100644 --- a/modules/nf-core/last/train/environment.yml +++ b/modules/nf-core/last/train/environment.yml @@ -6,4 +6,4 @@ channels: - bioconda - defaults dependencies: - - "bioconda::last=1542" + - "bioconda::last=1571" diff --git a/modules/nf-core/last/train/main.nf b/modules/nf-core/last/train/main.nf index 9f592b56e38..0829060f4ba 100644 --- a/modules/nf-core/last/train/main.nf +++ b/modules/nf-core/last/train/main.nf @@ -4,8 +4,8 @@ process LAST_TRAIN { conda "${moduleDir}/environment.yml" container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? - 'https://depot.galaxyproject.org/singularity/last:1542--h43eeafb_1' : - 'biocontainers/last:1542--h43eeafb_1' }" + 'https://depot.galaxyproject.org/singularity/last:1571--h43eeafb_0' : + 'biocontainers/last:1571--h43eeafb_0' }" input: tuple val(meta), path(fastx) diff --git a/modules/nf-core/last/train/tests/main.nf.test.snap b/modules/nf-core/last/train/tests/main.nf.test.snap index a3a0cc8f000..0c9185d5216 100644 --- a/modules/nf-core/last/train/tests/main.nf.test.snap +++ b/modules/nf-core/last/train/tests/main.nf.test.snap @@ -21,7 +21,7 @@ ] ], "2": [ - "versions.yml:md5,c5578547acf9e77e1e8f6bf796e32ac2" + "versions.yml:md5,0a9cfea9e8b841939e040ff6d45de96f" ], "multiqc": [ [ @@ -42,15 +42,15 @@ ] ], "versions": [ - "versions.yml:md5,c5578547acf9e77e1e8f6bf796e32ac2" + "versions.yml:md5,0a9cfea9e8b841939e040ff6d45de96f" ] } ], "meta": { "nf-test": "0.8.4", - "nextflow": "24.04.3" + "nextflow": "24.04.4" }, - "timestamp": "2024-07-10T14:50:11.528587" + "timestamp": "2024-08-26T15:29:24.633162" }, "sarscov2 - genome - contigs": { "content": [ @@ -61,7 +61,7 @@ "id": "contigs", "single_end": false }, - "contigs.genome.train:md5,3d7e1c630705d83c6a11b6f28d5aefcb" + "contigs.genome.train:md5,c269b6fee0f0b3011c4cb2764645955c" ] ], "1": [ @@ -74,7 +74,7 @@ ] ], "2": [ - "versions.yml:md5,38234cf053c708e57cc080990f777411" + "versions.yml:md5,1d8eb88ebe5170b8a0e561f5a3491f0e" ], "multiqc": [ [ @@ -91,18 +91,18 @@ "id": "contigs", "single_end": false }, - "contigs.genome.train:md5,3d7e1c630705d83c6a11b6f28d5aefcb" + "contigs.genome.train:md5,c269b6fee0f0b3011c4cb2764645955c" ] ], "versions": [ - "versions.yml:md5,38234cf053c708e57cc080990f777411" + "versions.yml:md5,1d8eb88ebe5170b8a0e561f5a3491f0e" ] } ], "meta": { "nf-test": "0.8.4", - "nextflow": "24.04.2" + "nextflow": "24.04.4" }, - "timestamp": "2024-07-03T18:04:34.914789" + "timestamp": "2024-08-26T15:29:03.278235" } } \ No newline at end of file