From 9d07b009586f01d9475c25aa91416ecd28eb80ac Mon Sep 17 00:00:00 2001 From: Maxime U Garcia Date: Thu, 10 Oct 2024 16:45:54 +0200 Subject: [PATCH] Be consistent with Setup - Set up or Install --- .github/workflows/test.yml | 36 ++++++++++++++++++------------------ 1 file changed, 18 insertions(+), 18 deletions(-) diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml index e689240e9b7..140e7412036 100644 --- a/.github/workflows/test.yml +++ b/.github/workflows/test.yml @@ -44,12 +44,12 @@ jobs: - name: Check out repository uses: actions/checkout@eef61447b9ff4aafe5dcd4e0bbf5d482be7e7871 # v4 - - name: Install NodeJS + - name: Set up NodeJS uses: actions/setup-node@0a44ba7841725637a19e28fa30b79a866c81b0a6 # v4 with: node-version: "20" - - name: Install Prettier + - name: Set up Prettier run: npm install -g prettier@3.2.5 - name: Run Prettier --check @@ -64,7 +64,7 @@ jobs: with: node-version: "20" - - name: Install editorconfig-checker + - name: Set up editorconfig-checker run: npm install -g editorconfig-checker - name: Run ECLint check @@ -163,7 +163,7 @@ jobs: restore-keys: | ${{ runner.os }}-pip - - name: Install pip + - name: Set up pip run: python -m pip install --upgrade pip - uses: actions/setup-java@b36c23c0d998641eff861008f374ee103c25ac73 # v4 @@ -171,10 +171,10 @@ jobs: distribution: "temurin" java-version: "17" - - name: Setup Nextflow + - name: Set up Nextflow uses: nf-core/setup-nextflow@v2 - - name: Install nf-core tools development version + - name: Set up nf-core tools development version run: python -m pip install --upgrade --force-reinstall git+https://github.com/nf-core/tools.git@dev - name: Lint module ${{ matrix.tags }} @@ -201,7 +201,7 @@ jobs: with: python-version: "3.11" - - name: Install pip + - name: Set up pip run: python -m pip install --upgrade pip - uses: actions/setup-java@b36c23c0d998641eff861008f374ee103c25ac73 # v4 @@ -209,10 +209,10 @@ jobs: distribution: "temurin" java-version: "17" - - name: Setup Nextflow + - name: Set up Nextflow uses: nf-core/setup-nextflow@561fcfc7146dcb12e3871909b635ab092a781f34 # v2 - - name: Install nf-core tools development version + - name: Set up nf-core tools development version run: python -m pip install --upgrade --force-reinstall git+https://github.com/nf-core/tools.git@dev - name: Lint module ${{ matrix.tags }} @@ -413,19 +413,19 @@ jobs: restore-keys: | ${{ runner.os }}-pip-pytest - - name: Install Python dependencies + - name: Set up Python dependencies run: python -m pip install --upgrade pip pytest-workflow cryptography - uses: actions/setup-java@b36c23c0d998641eff861008f374ee103c25ac73 # v4 with: distribution: "temurin" java-version: "17" - - name: Setup Nextflow ${{ matrix.NXF_VER }} + - name: Set up Nextflow ${{ matrix.NXF_VER }} uses: nf-core/setup-nextflow@v2 with: version: "${{ matrix.NXF_VER }}" - - name: Setup apptainer + - name: Set up apptainer if: matrix.profile == 'singularity' uses: eWaterCycle/setup-apptainer@main @@ -442,7 +442,7 @@ jobs: channels: conda-forge,bioconda python-version: ${{ matrix.python-version }} - - name: Conda setup + - name: Set up Conda run: | conda clean -a conda install -n base conda-libmamba-solver @@ -659,15 +659,15 @@ jobs: with: distribution: "temurin" java-version: "17" - - name: Setup Nextflow + - name: Set up Nextflow uses: nf-core/setup-nextflow@v2 - - name: Install nf-test + - name: Set up nf-test uses: nf-core/setup-nf-test@v1 with: version: ${{ env.NFTEST_VER }} - - name: Setup apptainer + - name: Set up apptainer if: matrix.profile == 'singularity' uses: eWaterCycle/setup-apptainer@main @@ -690,7 +690,7 @@ jobs: restore-keys: | ${{ runner.os }}-pip-pdiff - - name: Install Python dependencies + - name: Set up Python dependencies run: python -m pip install --upgrade pip pdiff cryptography - name: Set up miniconda @@ -701,7 +701,7 @@ jobs: auto-update-conda: true channels: conda-forge,bioconda - - name: Conda setup + - name: Set up Conda if: matrix.profile == 'conda' run: | conda clean -a