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ERROR ~ Error executing process > 'PATHOGENSURVEILLANCE:ASSIGN_REFERENCES:KHMER_TRIMLOWABUND (22_335)'
Caused by:
Process `PATHOGENSURVEILLANCE:ASSIGN_REFERENCES:KHMER_TRIMLOWABUND (22_335)` terminated with an error exit status (137)
Command executed:
trim-low-abund.py \
-M 32e9 \
-C 3 -Z 18 -V \
22-335_R1_subset.fastq.gz 22-335_R2_subset.fastq.gz
cat <<-END_VERSIONS > versions.yml
"PATHOGENSURVEILLANCE:ASSIGN_REFERENCES:KHMER_TRIMLOWABUND":
khmer: $( trim-low-abund.py --version 2>&1 | grep ^khmer | sed 's/^khmer //' )
END_VERSIONS
Command exit status:
137
Command output:
(empty)
Command error:
WARNING: The requested image's platform (linux/amd64) does not match the detected host platform (linux/arm64/v8) and no specific platform was requested
.command.sh: line 5: 35 Killed trim-low-abund.py -M 32e9 -C 3 -Z 18 -V 22-335_R1_subset.fastq.gz 22-335_R2_subset.fastq.gz
Work dir:
/Users/nanopore/Documents/pathogensurveillance/work/07/77ca44600e0766b81c283fea32b375
Tip: view the complete command output by changing to the process work dir and entering the command `cat .command.out`
-- Check '.nextflow.log' file for details
The text was updated successfully, but these errors were encountered:
When running the pipeline in an Apple M3 Max:
The text was updated successfully, but these errors were encountered: