From a39715844e4ee0a46973680ba34a13563ef27ef0 Mon Sep 17 00:00:00 2001 From: Harshil Patel Date: Tue, 20 Jul 2021 20:32:02 +0100 Subject: [PATCH] Bump version to v3.3 --- CHANGELOG.md | 5 ++--- nextflow.config | 2 +- 2 files changed, 3 insertions(+), 4 deletions(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index 6795ab004..d5bb9d900 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -3,15 +3,13 @@ The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/) and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html). -## [Unpublished Version / DEV] +## [[3.3](https://github.com/nf-core/rnaseq/releases/tag/3.3)] - 2021-07-26 ### Enhancements & fixes * Updated pipeline template to [nf-core/tools 2.0.1](https://github.com/nf-core/tools/releases/tag/2.0.1) * [[#668](https://github.com/nf-core/rnaseq/issues/668)] - Salmon quant with UMI-tools does not work -### Parameters - ### Software dependencies Note, since the pipeline is now using Nextflow DSL2, each process will be run with its own [Biocontainer](https://biocontainers.pro/#/registry). This means that on occasion it is entirely possible for the pipeline to be using different versions of the same tool. However, the overall software dependency changes compared to the last release have been listed below for reference. @@ -19,6 +17,7 @@ Note, since the pipeline is now using Nextflow DSL2, each process will be run wi | Dependency | Old version | New version | |-------------|-------------|-------------| | `umi_tools` | 1.1.1 | 1.1.2 | +| `samtools` | 1.10 | 1.12 | > **NB:** Dependency has been __updated__ if both old and new version information is present. > **NB:** Dependency has been __added__ if just the new version information is present. diff --git a/nextflow.config b/nextflow.config index 0a3e7ed88..714ac80d9 100644 --- a/nextflow.config +++ b/nextflow.config @@ -221,7 +221,7 @@ manifest { description = 'Nextflow RNA-Seq analysis pipeline, part of the nf-core community.' mainScript = 'main.nf' nextflowVersion = '!>=21.04.0' - version = '3.3dev' + version = '3.3' } // Function to ensure that resource requirements don't go beyond