diff --git a/workflows/rnaseq/main.nf b/workflows/rnaseq/main.nf index 02e1d25c2..288ed8c60 100755 --- a/workflows/rnaseq/main.nf +++ b/workflows/rnaseq/main.nf @@ -310,7 +310,7 @@ workflow RNASEQ { .out .lib_format_counts .join(ch_strand_fastq.auto_strand) - .map { + .map { meta, json, reads -> def salmon_strand_analysis = getSalmonInferredStrandedness(json, stranded_threshold=params.stranded_threshold, unstranded_threshold=params.unstranded_threshold) strandedness = salmon_strand_analysis.inferred_strandedness