diff --git a/CHANGELOG.md b/CHANGELOG.md
index 2e6ce3867..8de447e70 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -3,7 +3,20 @@
The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/)
and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
-## v3.16.0dev - [date]
+## [[3.16.0](https://github.com/nf-core/rnaseq/releases/tag/3.16.0)] - 2024-10-02
+
+### Credits
+
+Special thanks to the following for their contributions to the release:
+
+- [Adam Talbot](https://github.com/adamrtalbot)
+- [Ezra Greenberg](https://github.com/egreenberg7)
+- [Jonathan Manning](https://github.com/pinin4fjords)
+- [Matthias Zepper](https://github.com/MatthiasZepper)
+- [Maxime Garcia](https://github.com/maxulysse)
+- [Paolo Di Tommaso](https://github.com/pditommaso)
+- [Phil Ewels](https://github.com/ewels)
+- [Shaun Regenbaum](https://github.com/Shaun-Regenbaum)
### Enhancements & fixes
diff --git a/nextflow.config b/nextflow.config
index 94481109e..d2b1f40a9 100644
--- a/nextflow.config
+++ b/nextflow.config
@@ -345,7 +345,7 @@ manifest {
description = """RNA sequencing analysis pipeline for gene/isoform quantification and extensive quality control."""
mainScript = 'main.nf'
nextflowVersion = '!>=23.04.0'
- version = '3.16.0dev'
+ version = '3.16.0'
doi = 'https://doi.org/10.5281/zenodo.1400710'
}
diff --git a/tests/default.nf.test.snap b/tests/default.nf.test.snap
index 13dccd5f5..296b93241 100644
--- a/tests/default.nf.test.snap
+++ b/tests/default.nf.test.snap
@@ -43,7 +43,7 @@
"untar": 1.34
},
"Workflow": {
- "nf-core/rnaseq": "v3.16.0dev"
+ "nf-core/rnaseq": "v3.16.0"
}
},
[
@@ -227,7 +227,7 @@
"untar": 1.34
},
"Workflow": {
- "nf-core/rnaseq": "v3.16.0dev"
+ "nf-core/rnaseq": "v3.16.0"
}
},
[
@@ -1595,4 +1595,4 @@
},
"timestamp": "2024-10-02T08:39:09.000328"
}
-}
\ No newline at end of file
+}
diff --git a/tests/featurecounts_group_type.nf.test.snap b/tests/featurecounts_group_type.nf.test.snap
index a74557fc7..ee17ab23d 100644
--- a/tests/featurecounts_group_type.nf.test.snap
+++ b/tests/featurecounts_group_type.nf.test.snap
@@ -43,7 +43,7 @@
"untar": 1.34
},
"Workflow": {
- "nf-core/rnaseq": "v3.16.0dev"
+ "nf-core/rnaseq": "v3.16.0"
}
},
[
@@ -221,7 +221,7 @@
"untar": 1.34
},
"Workflow": {
- "nf-core/rnaseq": "v3.16.0dev"
+ "nf-core/rnaseq": "v3.16.0"
}
},
[
@@ -1543,4 +1543,4 @@
},
"timestamp": "2024-10-02T07:37:24.538529"
}
-}
\ No newline at end of file
+}
diff --git a/tests/hisat2.nf.test.snap b/tests/hisat2.nf.test.snap
index 99ddfa937..4de59e1ae 100644
--- a/tests/hisat2.nf.test.snap
+++ b/tests/hisat2.nf.test.snap
@@ -44,7 +44,7 @@
"untar": 1.34
},
"Workflow": {
- "nf-core/rnaseq": "v3.16.0dev"
+ "nf-core/rnaseq": "v3.16.0"
}
},
[
@@ -224,7 +224,7 @@
"untar": 1.34
},
"Workflow": {
- "nf-core/rnaseq": "v3.16.0dev"
+ "nf-core/rnaseq": "v3.16.0"
}
},
[
@@ -1441,4 +1441,4 @@
},
"timestamp": "2024-10-02T07:43:07.13584"
}
-}
\ No newline at end of file
+}
diff --git a/tests/kallisto.nf.test.snap b/tests/kallisto.nf.test.snap
index d69ef977c..764adab68 100644
--- a/tests/kallisto.nf.test.snap
+++ b/tests/kallisto.nf.test.snap
@@ -56,7 +56,7 @@
"untar": 1.34
},
"Workflow": {
- "nf-core/rnaseq": "v3.16.0dev"
+ "nf-core/rnaseq": "v3.16.0"
}
},
[
@@ -305,7 +305,7 @@
"untar": 1.34
},
"Workflow": {
- "nf-core/rnaseq": "v3.16.0dev"
+ "nf-core/rnaseq": "v3.16.0"
}
},
[
@@ -342,4 +342,4 @@
},
"timestamp": "2024-10-02T07:47:31.044439"
}
-}
\ No newline at end of file
+}
diff --git a/tests/min_mapped_reads.nf.test.snap b/tests/min_mapped_reads.nf.test.snap
index 69637a301..1533ec60d 100644
--- a/tests/min_mapped_reads.nf.test.snap
+++ b/tests/min_mapped_reads.nf.test.snap
@@ -134,7 +134,7 @@
"untar": 1.34
},
"Workflow": {
- "nf-core/rnaseq": "v3.16.0dev"
+ "nf-core/rnaseq": "v3.16.0"
}
},
[
@@ -1321,7 +1321,7 @@
"untar": 1.34
},
"Workflow": {
- "nf-core/rnaseq": "v3.16.0dev"
+ "nf-core/rnaseq": "v3.16.0"
}
},
[
@@ -1370,4 +1370,4 @@
},
"timestamp": "2024-10-02T07:55:19.233936"
}
-}
\ No newline at end of file
+}
diff --git a/tests/remove_ribo_rna.nf.test.snap b/tests/remove_ribo_rna.nf.test.snap
index 528163582..6097461ef 100644
--- a/tests/remove_ribo_rna.nf.test.snap
+++ b/tests/remove_ribo_rna.nf.test.snap
@@ -140,7 +140,7 @@
"untar": 1.34
},
"Workflow": {
- "nf-core/rnaseq": "v3.16.0dev"
+ "nf-core/rnaseq": "v3.16.0"
}
},
[
@@ -1571,7 +1571,7 @@
"untar": 1.34
},
"Workflow": {
- "nf-core/rnaseq": "v3.16.0dev"
+ "nf-core/rnaseq": "v3.16.0"
}
},
[
@@ -1620,4 +1620,4 @@
},
"timestamp": "2024-10-02T08:08:00.752563"
}
-}
\ No newline at end of file
+}
diff --git a/tests/salmon.nf.test.snap b/tests/salmon.nf.test.snap
index a66fb0068..c528c6180 100644
--- a/tests/salmon.nf.test.snap
+++ b/tests/salmon.nf.test.snap
@@ -50,7 +50,7 @@
"untar": 1.34
},
"Workflow": {
- "nf-core/rnaseq": "v3.16.0dev"
+ "nf-core/rnaseq": "v3.16.0"
}
},
[
@@ -378,7 +378,7 @@
"untar": 1.34
},
"Workflow": {
- "nf-core/rnaseq": "v3.16.0dev"
+ "nf-core/rnaseq": "v3.16.0"
}
},
[
@@ -415,4 +415,4 @@
},
"timestamp": "2024-10-02T08:11:32.236118"
}
-}
\ No newline at end of file
+}
diff --git a/tests/skip_qc.nf.test.snap b/tests/skip_qc.nf.test.snap
index ff25d5c62..ffb89c42c 100644
--- a/tests/skip_qc.nf.test.snap
+++ b/tests/skip_qc.nf.test.snap
@@ -40,7 +40,7 @@
"untar": 1.34
},
"Workflow": {
- "nf-core/rnaseq": "v3.16.0dev"
+ "nf-core/rnaseq": "v3.16.0"
}
},
[
@@ -169,7 +169,7 @@
"untar": 1.34
},
"Workflow": {
- "nf-core/rnaseq": "v3.16.0dev"
+ "nf-core/rnaseq": "v3.16.0"
}
},
[
@@ -806,4 +806,4 @@
},
"timestamp": "2024-10-02T08:17:03.577873"
}
-}
\ No newline at end of file
+}
diff --git a/tests/skip_trimming.nf.test.snap b/tests/skip_trimming.nf.test.snap
index bbdcc5a51..775d007ea 100644
--- a/tests/skip_trimming.nf.test.snap
+++ b/tests/skip_trimming.nf.test.snap
@@ -130,7 +130,7 @@
"untar": 1.34
},
"Workflow": {
- "nf-core/rnaseq": "v3.16.0dev"
+ "nf-core/rnaseq": "v3.16.0"
}
},
[
@@ -1381,4 +1381,4 @@
},
"timestamp": "2024-10-02T08:24:30.328195"
}
-}
\ No newline at end of file
+}
diff --git a/tests/star_rsem.nf.test.snap b/tests/star_rsem.nf.test.snap
index b4e4f981b..ebf025d71 100644
--- a/tests/star_rsem.nf.test.snap
+++ b/tests/star_rsem.nf.test.snap
@@ -134,7 +134,7 @@
"untar": 1.34
},
"Workflow": {
- "nf-core/rnaseq": "v3.16.0dev"
+ "nf-core/rnaseq": "v3.16.0"
}
},
[
@@ -1450,7 +1450,7 @@
"untar": 1.34
},
"Workflow": {
- "nf-core/rnaseq": "v3.16.0dev"
+ "nf-core/rnaseq": "v3.16.0"
}
},
[
@@ -1499,4 +1499,4 @@
},
"timestamp": "2024-10-02T08:31:54.433237"
}
-}
\ No newline at end of file
+}
diff --git a/workflows/rnaseq/assets/multiqc/multiqc_config.yml b/workflows/rnaseq/assets/multiqc/multiqc_config.yml
index 63fad09f1..dd8bc621c 100644
--- a/workflows/rnaseq/assets/multiqc/multiqc_config.yml
+++ b/workflows/rnaseq/assets/multiqc/multiqc_config.yml
@@ -1,5 +1,5 @@
report_comment: >
- This report has been generated by the nf-core/rnaseq analysis pipeline. For information about how to interpret these results, please see the documentation.
+ This report has been generated by the nf-core/rnaseq analysis pipeline. For information about how to interpret these results, please see the documentation.
report_section_order:
# Important checks and failures
sample-status: