diff --git a/CHANGELOG.md b/CHANGELOG.md index 2e6ce3867..8de447e70 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -3,7 +3,20 @@ The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/) and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html). -## v3.16.0dev - [date] +## [[3.16.0](https://github.com/nf-core/rnaseq/releases/tag/3.16.0)] - 2024-10-02 + +### Credits + +Special thanks to the following for their contributions to the release: + +- [Adam Talbot](https://github.com/adamrtalbot) +- [Ezra Greenberg](https://github.com/egreenberg7) +- [Jonathan Manning](https://github.com/pinin4fjords) +- [Matthias Zepper](https://github.com/MatthiasZepper) +- [Maxime Garcia](https://github.com/maxulysse) +- [Paolo Di Tommaso](https://github.com/pditommaso) +- [Phil Ewels](https://github.com/ewels) +- [Shaun Regenbaum](https://github.com/Shaun-Regenbaum) ### Enhancements & fixes diff --git a/nextflow.config b/nextflow.config index 94481109e..d2b1f40a9 100644 --- a/nextflow.config +++ b/nextflow.config @@ -345,7 +345,7 @@ manifest { description = """RNA sequencing analysis pipeline for gene/isoform quantification and extensive quality control.""" mainScript = 'main.nf' nextflowVersion = '!>=23.04.0' - version = '3.16.0dev' + version = '3.16.0' doi = 'https://doi.org/10.5281/zenodo.1400710' } diff --git a/tests/default.nf.test.snap b/tests/default.nf.test.snap index 13dccd5f5..296b93241 100644 --- a/tests/default.nf.test.snap +++ b/tests/default.nf.test.snap @@ -43,7 +43,7 @@ "untar": 1.34 }, "Workflow": { - "nf-core/rnaseq": "v3.16.0dev" + "nf-core/rnaseq": "v3.16.0" } }, [ @@ -227,7 +227,7 @@ "untar": 1.34 }, "Workflow": { - "nf-core/rnaseq": "v3.16.0dev" + "nf-core/rnaseq": "v3.16.0" } }, [ @@ -1595,4 +1595,4 @@ }, "timestamp": "2024-10-02T08:39:09.000328" } -} \ No newline at end of file +} diff --git a/tests/featurecounts_group_type.nf.test.snap b/tests/featurecounts_group_type.nf.test.snap index a74557fc7..ee17ab23d 100644 --- a/tests/featurecounts_group_type.nf.test.snap +++ b/tests/featurecounts_group_type.nf.test.snap @@ -43,7 +43,7 @@ "untar": 1.34 }, "Workflow": { - "nf-core/rnaseq": "v3.16.0dev" + "nf-core/rnaseq": "v3.16.0" } }, [ @@ -221,7 +221,7 @@ "untar": 1.34 }, "Workflow": { - "nf-core/rnaseq": "v3.16.0dev" + "nf-core/rnaseq": "v3.16.0" } }, [ @@ -1543,4 +1543,4 @@ }, "timestamp": "2024-10-02T07:37:24.538529" } -} \ No newline at end of file +} diff --git a/tests/hisat2.nf.test.snap b/tests/hisat2.nf.test.snap index 99ddfa937..4de59e1ae 100644 --- a/tests/hisat2.nf.test.snap +++ b/tests/hisat2.nf.test.snap @@ -44,7 +44,7 @@ "untar": 1.34 }, "Workflow": { - "nf-core/rnaseq": "v3.16.0dev" + "nf-core/rnaseq": "v3.16.0" } }, [ @@ -224,7 +224,7 @@ "untar": 1.34 }, "Workflow": { - "nf-core/rnaseq": "v3.16.0dev" + "nf-core/rnaseq": "v3.16.0" } }, [ @@ -1441,4 +1441,4 @@ }, "timestamp": "2024-10-02T07:43:07.13584" } -} \ No newline at end of file +} diff --git a/tests/kallisto.nf.test.snap b/tests/kallisto.nf.test.snap index d69ef977c..764adab68 100644 --- a/tests/kallisto.nf.test.snap +++ b/tests/kallisto.nf.test.snap @@ -56,7 +56,7 @@ "untar": 1.34 }, "Workflow": { - "nf-core/rnaseq": "v3.16.0dev" + "nf-core/rnaseq": "v3.16.0" } }, [ @@ -305,7 +305,7 @@ "untar": 1.34 }, "Workflow": { - "nf-core/rnaseq": "v3.16.0dev" + "nf-core/rnaseq": "v3.16.0" } }, [ @@ -342,4 +342,4 @@ }, "timestamp": "2024-10-02T07:47:31.044439" } -} \ No newline at end of file +} diff --git a/tests/min_mapped_reads.nf.test.snap b/tests/min_mapped_reads.nf.test.snap index 69637a301..1533ec60d 100644 --- a/tests/min_mapped_reads.nf.test.snap +++ b/tests/min_mapped_reads.nf.test.snap @@ -134,7 +134,7 @@ "untar": 1.34 }, "Workflow": { - "nf-core/rnaseq": "v3.16.0dev" + "nf-core/rnaseq": "v3.16.0" } }, [ @@ -1321,7 +1321,7 @@ "untar": 1.34 }, "Workflow": { - "nf-core/rnaseq": "v3.16.0dev" + "nf-core/rnaseq": "v3.16.0" } }, [ @@ -1370,4 +1370,4 @@ }, "timestamp": "2024-10-02T07:55:19.233936" } -} \ No newline at end of file +} diff --git a/tests/remove_ribo_rna.nf.test.snap b/tests/remove_ribo_rna.nf.test.snap index 528163582..6097461ef 100644 --- a/tests/remove_ribo_rna.nf.test.snap +++ b/tests/remove_ribo_rna.nf.test.snap @@ -140,7 +140,7 @@ "untar": 1.34 }, "Workflow": { - "nf-core/rnaseq": "v3.16.0dev" + "nf-core/rnaseq": "v3.16.0" } }, [ @@ -1571,7 +1571,7 @@ "untar": 1.34 }, "Workflow": { - "nf-core/rnaseq": "v3.16.0dev" + "nf-core/rnaseq": "v3.16.0" } }, [ @@ -1620,4 +1620,4 @@ }, "timestamp": "2024-10-02T08:08:00.752563" } -} \ No newline at end of file +} diff --git a/tests/salmon.nf.test.snap b/tests/salmon.nf.test.snap index a66fb0068..c528c6180 100644 --- a/tests/salmon.nf.test.snap +++ b/tests/salmon.nf.test.snap @@ -50,7 +50,7 @@ "untar": 1.34 }, "Workflow": { - "nf-core/rnaseq": "v3.16.0dev" + "nf-core/rnaseq": "v3.16.0" } }, [ @@ -378,7 +378,7 @@ "untar": 1.34 }, "Workflow": { - "nf-core/rnaseq": "v3.16.0dev" + "nf-core/rnaseq": "v3.16.0" } }, [ @@ -415,4 +415,4 @@ }, "timestamp": "2024-10-02T08:11:32.236118" } -} \ No newline at end of file +} diff --git a/tests/skip_qc.nf.test.snap b/tests/skip_qc.nf.test.snap index ff25d5c62..ffb89c42c 100644 --- a/tests/skip_qc.nf.test.snap +++ b/tests/skip_qc.nf.test.snap @@ -40,7 +40,7 @@ "untar": 1.34 }, "Workflow": { - "nf-core/rnaseq": "v3.16.0dev" + "nf-core/rnaseq": "v3.16.0" } }, [ @@ -169,7 +169,7 @@ "untar": 1.34 }, "Workflow": { - "nf-core/rnaseq": "v3.16.0dev" + "nf-core/rnaseq": "v3.16.0" } }, [ @@ -806,4 +806,4 @@ }, "timestamp": "2024-10-02T08:17:03.577873" } -} \ No newline at end of file +} diff --git a/tests/skip_trimming.nf.test.snap b/tests/skip_trimming.nf.test.snap index bbdcc5a51..775d007ea 100644 --- a/tests/skip_trimming.nf.test.snap +++ b/tests/skip_trimming.nf.test.snap @@ -130,7 +130,7 @@ "untar": 1.34 }, "Workflow": { - "nf-core/rnaseq": "v3.16.0dev" + "nf-core/rnaseq": "v3.16.0" } }, [ @@ -1381,4 +1381,4 @@ }, "timestamp": "2024-10-02T08:24:30.328195" } -} \ No newline at end of file +} diff --git a/tests/star_rsem.nf.test.snap b/tests/star_rsem.nf.test.snap index b4e4f981b..ebf025d71 100644 --- a/tests/star_rsem.nf.test.snap +++ b/tests/star_rsem.nf.test.snap @@ -134,7 +134,7 @@ "untar": 1.34 }, "Workflow": { - "nf-core/rnaseq": "v3.16.0dev" + "nf-core/rnaseq": "v3.16.0" } }, [ @@ -1450,7 +1450,7 @@ "untar": 1.34 }, "Workflow": { - "nf-core/rnaseq": "v3.16.0dev" + "nf-core/rnaseq": "v3.16.0" } }, [ @@ -1499,4 +1499,4 @@ }, "timestamp": "2024-10-02T08:31:54.433237" } -} \ No newline at end of file +} diff --git a/workflows/rnaseq/assets/multiqc/multiqc_config.yml b/workflows/rnaseq/assets/multiqc/multiqc_config.yml index 63fad09f1..dd8bc621c 100644 --- a/workflows/rnaseq/assets/multiqc/multiqc_config.yml +++ b/workflows/rnaseq/assets/multiqc/multiqc_config.yml @@ -1,5 +1,5 @@ report_comment: > - This report has been generated by the nf-core/rnaseq analysis pipeline. For information about how to interpret these results, please see the documentation. + This report has been generated by the nf-core/rnaseq analysis pipeline. For information about how to interpret these results, please see the documentation. report_section_order: # Important checks and failures sample-status: