From f8fd5df5dcf7b742bd75e256c22be95281474497 Mon Sep 17 00:00:00 2001 From: daisymut Date: Thu, 16 Nov 2023 16:43:40 +0100 Subject: [PATCH] updated CITATIONS.md --- CITATIONS.md | 6 ++++-- 1 file changed, 4 insertions(+), 2 deletions(-) diff --git a/CITATIONS.md b/CITATIONS.md index 6411d58..fc47df4 100644 --- a/CITATIONS.md +++ b/CITATIONS.md @@ -12,7 +12,7 @@ - [BWA](https://www.ncbi.nlm.nih.gov/pubmed/19451168/) -> Li H, Durbin R. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics. 2009 Jul 15;25(14):1754-60. doi: 10.1093/bioinformatics/btp324. Epub 2009 May 18. PubMed PMID: 19451168; PubMed Central PMCID: PMC2705234. + > Li H, Durbin R. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics. 2009 Jul 15;25(14):1754-60. doi: 10.1093/bioinformatics/btp324. Epub 2009 May 18. PubMed PMID: 19451168; PubMed Central PMCID: PMC2705234. - [deepTools](https://www.ncbi.nlm.nih.gov/pubmed/27079975/) @@ -32,7 +32,9 @@ > Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R; 1000 Genome Project Data Processing Subgroup. The Sequence Alignment/Map format and SAMtools. Bioinformatics. 2009 Aug 15;25(16):2078-9. doi: 10.1093/bioinformatics/btp352. Epub 2009 Jun 8. PubMed PMID: 19505943; PubMed Central PMCID: PMC2723002. -- [Trim Galore!](https://www.bioinformatics.babraham.ac.uk/projects/trim_galore/) +- [Trimmomatic](https://pubmed.ncbi.nlm.nih.gov/24695404/) + + > Bolger AM, Lohse M, Usadel B. Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics. 2014 Aug 1;30(15):2114-20. doi: 10.1093/bioinformatics/btu170. Epub 2014 Apr 1. PMID: 24695404; PMCID: PMC4103590. ## R packages