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Running 'cellranger-arc count' with existing genome index #331

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ashwinikumarkulkarni opened this issue May 17, 2024 · 0 comments
Open

Running 'cellranger-arc count' with existing genome index #331

ashwinikumarkulkarni opened this issue May 17, 2024 · 0 comments
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enhancement New feature or request

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@ashwinikumarkulkarni
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Description of feature

Current version 2.6.0 does not allow running 'cellranger-arc count' with existing genome index. It keeps asking for 'genome' and 'gtf'. Also, it does not recognize '--cellranger_index' as a parameter when '--aligner' is set to 'cellrangerarc'. Thanks!
@ashwinikumarkulkarni ashwinikumarkulkarni added the enhancement New feature or request label May 17, 2024
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