From d08876c00b6fc3e66a36eaa96f1c30386c6a455e Mon Sep 17 00:00:00 2001 From: Erik Fasterius Date: Fri, 16 Aug 2024 13:12:26 +0200 Subject: [PATCH] Update snapshots --- tests/pipeline/test_downstream.nf.test.snap | 4 ++-- tests/pipeline/test_spaceranger_ffpe_v1.nf.test.snap | 4 ++-- .../pipeline/test_spaceranger_ffpe_v2_cytassist.nf.test.snap | 4 ++-- 3 files changed, 6 insertions(+), 6 deletions(-) diff --git a/tests/pipeline/test_downstream.nf.test.snap b/tests/pipeline/test_downstream.nf.test.snap index 8e1a3d2..b99dead 100644 --- a/tests/pipeline/test_downstream.nf.test.snap +++ b/tests/pipeline/test_downstream.nf.test.snap @@ -1,7 +1,7 @@ { "nf_core_pipeline_software_mqc_versions.yml": { "content": [ - "{CLUSTERING={quarto=1.3.450, papermill=null}, QUALITY_CONTROLS={quarto=1.3.450, papermill=null}, READ_DATA={spatialdata_io=0.1.2}, SPACERANGER_UNTAR_REFERENCE={untar=1.3}, SPATIALLY_VARIABLE_GENES={quarto=1.3.450, papermill=null}, UNTAR_DOWNSTREAM_INPUT={untar=1.3}, Workflow={nf-core/spatialvi=v1.0dev}}" + "{CLUSTERING={quarto=1.3.450, papermill=null}, QUALITY_CONTROLS={quarto=1.3.450, papermill=null}, READ_DATA={spatialdata_io=0.1.2}, SPACERANGER_UNTAR_REFERENCE={untar=1.34}, SPATIALLY_VARIABLE_GENES={quarto=1.3.450, papermill=null}, UNTAR_DOWNSTREAM_INPUT={untar=1.34}, Workflow={nf-core/spatialvi=v1.0dev}}" ], "meta": { "nf-test": "0.8.4", @@ -9,4 +9,4 @@ }, "timestamp": "2024-03-19T18:46:59.035976" } -} \ No newline at end of file +} diff --git a/tests/pipeline/test_spaceranger_ffpe_v1.nf.test.snap b/tests/pipeline/test_spaceranger_ffpe_v1.nf.test.snap index bc10f4c..7b91971 100644 --- a/tests/pipeline/test_spaceranger_ffpe_v1.nf.test.snap +++ b/tests/pipeline/test_spaceranger_ffpe_v1.nf.test.snap @@ -1,7 +1,7 @@ { "software_versions": { "content": [ - "{CUSTOM_DUMPSOFTWAREVERSIONS={python=3.11.7, yaml=5.4.1}, FASTQC={fastqc=0.12.1}, SPACERANGER_COUNT={spaceranger=2.1.0}, SPACERANGER_UNTAR_REFERENCE={untar=1.30}, CLUSTERING={quarto=1.3.302, scanpy=1.9.3}, QUALITY_CONTROLS={quarto=1.3.302, scanpy=1.9.3}, READ_DATA={scanpy=1.7.2}, SPATIAL_DE={SpatialDE=1.1.3, leidenalg=0.9.1, quarto=1.3.302, scanpy=1.9.3}, Workflow={nf-core/spatialvi=1.0dev}}" + "{CUSTOM_DUMPSOFTWAREVERSIONS={python=3.11.7, yaml=5.4.1}, FASTQC={fastqc=0.12.1}, SPACERANGER_COUNT={spaceranger=2.1.0}, SPACERANGER_UNTAR_REFERENCE={untar=1.34}, CLUSTERING={quarto=1.3.302, scanpy=1.9.3}, QUALITY_CONTROLS={quarto=1.3.302, scanpy=1.9.3}, READ_DATA={scanpy=1.7.2}, SPATIAL_DE={SpatialDE=1.1.3, leidenalg=0.9.1, quarto=1.3.302, scanpy=1.9.3}, Workflow={nf-core/spatialvi=1.0dev}}" ], "meta": { "nf-test": "0.8.4", @@ -11,7 +11,7 @@ }, "nf_core_pipeline_software_mqc_versions.yml": { "content": [ - "{CLUSTERING={quarto=1.3.450, papermill=null}, FASTQC={fastqc=0.12.1}, QUALITY_CONTROLS={quarto=1.3.450, papermill=null}, READ_DATA={spatialdata_io=0.1.2}, SPACERANGER_COUNT={spaceranger=3.0.0}, SPACERANGER_UNTAR_REFERENCE={untar=1.3}, SPATIALLY_VARIABLE_GENES={quarto=1.3.450, papermill=null}, UNTAR_SPACERANGER_INPUT={untar=1.3}, Workflow={nf-core/spatialvi=v1.0dev}}" + "{CLUSTERING={quarto=1.3.450, papermill=null}, FASTQC={fastqc=0.12.1}, QUALITY_CONTROLS={quarto=1.3.450, papermill=null}, READ_DATA={spatialdata_io=0.1.2}, SPACERANGER_COUNT={spaceranger=3.0.0}, SPACERANGER_UNTAR_REFERENCE={untar=1.34}, SPATIALLY_VARIABLE_GENES={quarto=1.3.450, papermill=null}, UNTAR_SPACERANGER_INPUT={untar=1.34}, Workflow={nf-core/spatialvi=v1.0dev}}" ], "meta": { "nf-test": "0.8.4", diff --git a/tests/pipeline/test_spaceranger_ffpe_v2_cytassist.nf.test.snap b/tests/pipeline/test_spaceranger_ffpe_v2_cytassist.nf.test.snap index 8a82bd8..a245c7f 100644 --- a/tests/pipeline/test_spaceranger_ffpe_v2_cytassist.nf.test.snap +++ b/tests/pipeline/test_spaceranger_ffpe_v2_cytassist.nf.test.snap @@ -1,7 +1,7 @@ { "nf_core_pipeline_software_mqc_versions.yml": { "content": [ - "{CLUSTERING={quarto=1.3.450, papermill=null}, FASTQC={fastqc=0.12.1}, QUALITY_CONTROLS={quarto=1.3.450, papermill=null}, READ_DATA={spatialdata_io=0.1.2}, SPACERANGER_COUNT={spaceranger=3.0.0}, SPACERANGER_UNTAR_REFERENCE={untar=1.3}, SPATIALLY_VARIABLE_GENES={quarto=1.3.450, papermill=null}, UNTAR_SPACERANGER_INPUT={untar=1.3}, Workflow={nf-core/spatialvi=v1.0dev}}" + "{CLUSTERING={quarto=1.3.450, papermill=null}, FASTQC={fastqc=0.12.1}, QUALITY_CONTROLS={quarto=1.3.450, papermill=null}, READ_DATA={spatialdata_io=0.1.2}, SPACERANGER_COUNT={spaceranger=3.0.0}, SPACERANGER_UNTAR_REFERENCE={untar=1.34}, SPATIALLY_VARIABLE_GENES={quarto=1.3.450, papermill=null}, UNTAR_SPACERANGER_INPUT={untar=1.34}, Workflow={nf-core/spatialvi=v1.0dev}}" ], "meta": { "nf-test": "0.8.4", @@ -9,4 +9,4 @@ }, "timestamp": "2024-04-04T10:42:54.76102" } -} \ No newline at end of file +}