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Important! Template update for nf-core/tools v2.11.1 #62

Merged
merged 1 commit into from
Dec 20, 2023
Merged

Important! Template update for nf-core/tools v2.11.1 #62

merged 1 commit into from
Dec 20, 2023

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Version 2.11.1 of nf-core/tools has just been released with updates to the nf-core template. This automated pull-request attempts to apply the relevant updates to this pipeline.

Please make sure to merge this pull-request as soon as possible, resolving any merge conflicts in the nf-core-template-merge-2.11.1 branch (or your own fork, if you prefer). Once complete, make a new minor release of your pipeline.

For instructions on how to merge this PR, please see https://nf-co.re/docs/contributing/sync/.

For more information about this release of nf-core/tools, please see the v2.11.1 release page.

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github-actions bot commented Dec 20, 2023 •
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nf-core lint overall result: Passed ✅ ⚠️

Posted for pipeline commit 7fcda23

+| ✅ 158 tests passed       |+
#| ❔   2 tests were ignored |#
!| ❗  10 tests had warnings |!

❗ Test warnings:

  • files_exist - File not found: conf/igenomes.config
  • readme - README contains the placeholder zenodo.XXXXXXX. This should be replaced with the zenodo doi (after the first release).
  • pipeline_todos - TODO string in README.md: Describe the minimum required steps to execute the pipeline, e.g. how to prepare samplesheets.
  • pipeline_todos - TODO string in README.md: Add citation for pipeline after first release. Uncomment lines below and update Zenodo doi and badge at the top of this file.
  • pipeline_todos - TODO string in README.md: Add bibliography of tools and data used in your pipeline
  • pipeline_todos - TODO string in methods_description_template.yml: #Update the HTML below to your preferred methods description, e.g. add publication citation for this pipeline
  • pipeline_todos - TODO string in output.md: More details for each analytical step should probably be added,
  • pipeline_todos - TODO string in awsfulltest.yml: You can customise AWS full pipeline tests as required
  • pipeline_todos - TODO string in WorkflowSpatialtranscriptomics.groovy: Optionally add in-text citation tools to this list.
  • pipeline_todos - TODO string in WorkflowMain.groovy: Add Zenodo DOI for pipeline after first release

❔ Tests ignored:

✅ Tests passed:

Run details

  • nf-core/tools version 2.11.1
  • Run at 2023-12-20 17:06:35

@fasterius fasterius merged commit a6161b5 into dev Dec 20, 2023
8 checks passed
@fasterius fasterius deleted the nf-core-template-merge-2.11.1 branch December 20, 2023 17:31
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@nf-core-bot @fasterius