From 04a2ba7309c8fe41df872eff3b84265be9f2a51b Mon Sep 17 00:00:00 2001
From: Lili Andersson-Li <64467552+LilyAnderssonLee@users.noreply.github.com>
Date: Fri, 12 Apr 2024 08:52:27 +0200
Subject: [PATCH 1/2] update download-pipeline.yml

---
 .github/workflows/download_pipeline.yml | 6 ++++--
 1 file changed, 4 insertions(+), 2 deletions(-)

diff --git a/.github/workflows/download_pipeline.yml b/.github/workflows/download_pipeline.yml
index 2560d9c4..44d78b50 100644
--- a/.github/workflows/download_pipeline.yml
+++ b/.github/workflows/download_pipeline.yml
@@ -14,6 +14,8 @@ on:
   pull_request:
     types:
       - opened
+      - edited
+      - synchronize
     branches:
       - master
   pull_request_target:
@@ -28,7 +30,7 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - name: Install Nextflow
-        uses: nf-core/setup-nextflow@v1
+        uses: nf-core/setup-nextflow@v2
 
       - uses: actions/setup-python@0a5c61591373683505ea898e09a3ea4f39ef2b9c # v5
         with:
@@ -79,4 +81,4 @@ jobs:
         env:
           NXF_SINGULARITY_CACHEDIR: ./
           NXF_SINGULARITY_HOME_MOUNT: true
-        run: nextflow run ./${{ env.REPOTITLE_LOWERCASE }}/$( sed 's/\W/_/g' <<< ${{ env.REPO_BRANCH }}) -profile test,singularity --outdir ./results{% endraw %}
+        run: nextflow run ./${{ env.REPOTITLE_LOWERCASE }}/$( sed 's/\W/_/g' <<< ${{ env.REPO_BRANCH }}) -profile test,singularity --outdir ./results

From 06d2985bf6f35e55f97c8cba57d00e4df78f87a7 Mon Sep 17 00:00:00 2001
From: Lili Andersson-Li <64467552+LilyAnderssonLee@users.noreply.github.com>
Date: Fri, 12 Apr 2024 11:59:28 +0200
Subject: [PATCH 2/2] update download-pipeline.yml

---
 .github/workflows/download_pipeline.yml | 5 ++++-
 1 file changed, 4 insertions(+), 1 deletion(-)

diff --git a/.github/workflows/download_pipeline.yml b/.github/workflows/download_pipeline.yml
index 44d78b50..22dafd2e 100644
--- a/.github/workflows/download_pipeline.yml
+++ b/.github/workflows/download_pipeline.yml
@@ -32,9 +32,12 @@ jobs:
       - name: Install Nextflow
         uses: nf-core/setup-nextflow@v2
 
+      - name: Disk space cleanup
+        uses: jlumbroso/free-disk-space@54081f138730dfa15788a46383842cd2f914a1be # v1.3.1
+
       - uses: actions/setup-python@0a5c61591373683505ea898e09a3ea4f39ef2b9c # v5
         with:
-          python-version: "3.11"
+          python-version: "3.12"
           architecture: "x64"
       - uses: eWaterCycle/setup-singularity@931d4e31109e875b13309ae1d07c70ca8fbc8537 # v7
         with: