From 91fc6f74dcafbb00da6c2218b9b862daa15ecdae Mon Sep 17 00:00:00 2001 From: James Fellows Yates Date: Tue, 25 Jul 2023 11:45:15 +0200 Subject: [PATCH] After comments from MAxime --- subworkflows/local/profiling.nf | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/subworkflows/local/profiling.nf b/subworkflows/local/profiling.nf index bb0c8f9a..9e0f0165 100644 --- a/subworkflows/local/profiling.nf +++ b/subworkflows/local/profiling.nf @@ -74,8 +74,7 @@ workflow PROFILING { // as we don't run run on a per-sample basis due to huge datbaases // so all samples are in one run and so sample-specific metadata // unnecessary. Set as database name to prevent `null` job ID and prefix. - def temp_meta = [ id: db_meta.db_name ] - def new_meta = db_meta + temp_meta + def new_meta = db_meta + [ id: db_meta.db_name ] // Extend database parameters to specify whether to save alignments or not def sam_format = params.malt_save_reads ? ' --alignments ./ -za false' : ""