diff --git a/subworkflows/local/generate_downstream_samplesheets/main.nf b/subworkflows/local/generate_downstream_samplesheets/main.nf index a3cbf23b..b1499bd4 100644 --- a/subworkflows/local/generate_downstream_samplesheets/main.nf +++ b/subworkflows/local/generate_downstream_samplesheets/main.nf @@ -10,7 +10,7 @@ workflow GENERATE_DOWNSTREAM_SAMPLESHEETS { format = 'csv' // most common format in nf-core format_sep = ',' - if ( params.generate_pipeline_samplesheets == 'mag' && params.save_analysis_ready_reads ) { + if ( params.generate_pipeline_samplesheets == 'mag' && params.save_analysis_ready_fastqs ) { def fastq_rel_path = '/' format = 'csv' format_sep = ','